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Merge branch 'master' into directoryRenamePattern
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* master:
  Added LayoutFormatterPreferences (and related files) (JabRef#1608)
  [WIP] Create new fetcher infrastructure (JabRef#1594)
  Set user agent to fix 403 status error
  More fields added to FieldName (JabRef#1614)
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Siedlerchr committed Jul 22, 2016
2 parents 750f33b + 23fdfe2 commit 6aef6bd
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Showing 128 changed files with 1,961 additions and 821 deletions.
1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -20,6 +20,7 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#
- Added ISBN integrity checker
- Added filter to not show selected integrity checks
- Enhance the entry customization dialog to give better visual feedback
- The arXiv fetcher now also supports free-text search queries

### Fixed
- Fixed [#1264](https://github.com/JabRef/jabref/issues/1264): S with caron does not render correctly
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4 changes: 2 additions & 2 deletions src/main/java/net/sf/jabref/external/FindFullTextAction.java
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Expand Up @@ -26,7 +26,7 @@
import net.sf.jabref.gui.FileListTableModel;
import net.sf.jabref.gui.undo.UndoableFieldChange;
import net.sf.jabref.gui.worker.AbstractWorker;
import net.sf.jabref.logic.fulltext.FindFullText;
import net.sf.jabref.logic.importer.FulltextFetchers;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.entry.BibEntry;
import net.sf.jabref.model.entry.FieldName;
Expand Down Expand Up @@ -59,7 +59,7 @@ public void init() throws Throwable {
public void run() {
// TODO: just download for all entries and save files without dialog
entry = basePanel.getSelectedEntries().get(0);
FindFullText fft = new FindFullText();
FulltextFetchers fft = new FulltextFetchers();
result = fft.findFullTextPDF(entry);
}

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5 changes: 4 additions & 1 deletion src/main/java/net/sf/jabref/gui/BasePanel.java
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Expand Up @@ -117,6 +117,7 @@
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.labelpattern.LabelPatternUtil;
import net.sf.jabref.logic.layout.Layout;
import net.sf.jabref.logic.layout.LayoutFormatterPreferences;
import net.sf.jabref.logic.layout.LayoutHelper;
import net.sf.jabref.logic.util.UpdateField;
import net.sf.jabref.logic.util.io.FileBasedLock;
Expand Down Expand Up @@ -991,7 +992,9 @@ private void copyKeyAndTitle() {
"\\bibtexkey - \\begin{title}\\format[RemoveBrackets]{\\title}\\end{title}\n");
Layout layout;
try {
layout = new LayoutHelper(sr, Globals.prefs, Globals.journalAbbreviationLoader).getLayoutFromText();
layout = new LayoutHelper(sr,
LayoutFormatterPreferences.fromPreferences(Globals.prefs, Globals.journalAbbreviationLoader))
.getLayoutFromText();
} catch (IOException e) {
LOGGER.info("Could not get layout", e);
return;
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Expand Up @@ -44,9 +44,9 @@

import net.sf.jabref.MetaData;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinder;
import net.sf.jabref.gui.util.FocusRequester;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.entry.FieldName;

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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/GenFieldsCustomizer.java
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Expand Up @@ -38,8 +38,8 @@
import net.sf.jabref.Globals;
import net.sf.jabref.gui.entryeditor.EntryEditorTabList;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.labelpattern.LabelPatternUtil;
import net.sf.jabref.preferences.JabRefPreferences;
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4 changes: 2 additions & 2 deletions src/main/java/net/sf/jabref/gui/ImportInspectionDialog.java
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Expand Up @@ -76,7 +76,6 @@
import net.sf.jabref.gui.groups.GroupTreeNodeViewModel;
import net.sf.jabref.gui.groups.UndoableChangeEntriesOfGroup;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.renderer.GeneralRenderer;
import net.sf.jabref.gui.undo.NamedCompound;
Expand All @@ -90,6 +89,7 @@
import net.sf.jabref.logic.groups.AllEntriesGroup;
import net.sf.jabref.logic.groups.EntriesGroupChange;
import net.sf.jabref.logic.groups.GroupTreeNode;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.labelpattern.LabelPatternUtil;
import net.sf.jabref.logic.util.UpdateField;
Expand Down Expand Up @@ -1428,7 +1428,7 @@ public Object getColumnValue(BibEntry entry, int i) {
FileListTableModel model = new FileListTableModel();
entry.getFieldOptional(FieldName.FILE).ifPresent(model::setContent);
fileLabel.setToolTipText(model.getToolTipHTMLRepresentation());
if (model.getRowCount() > 0) {
if (model.getRowCount() > 0 && model.getEntry(0).type.isPresent()) {
fileLabel.setIcon(model.getEntry(0).type.get().getIcon());
}
return fileLabel;
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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/JabRefFrame.java
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Expand Up @@ -99,7 +99,6 @@
import net.sf.jabref.gui.help.AboutAction;
import net.sf.jabref.gui.help.AboutDialog;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.journals.ManageJournalsAction;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.keyboard.KeyBindingRepository;
Expand All @@ -119,6 +118,7 @@
import net.sf.jabref.importer.ParserResult;
import net.sf.jabref.importer.fetcher.GeneralFetcher;
import net.sf.jabref.logic.CustomEntryTypesManager;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.logging.GuiAppender;
import net.sf.jabref.logic.preferences.LastFocusedTabPreferences;
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4 changes: 3 additions & 1 deletion src/main/java/net/sf/jabref/gui/PreviewPanel.java
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Expand Up @@ -55,6 +55,7 @@
import net.sf.jabref.logic.exporter.ExportFormats;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.layout.Layout;
import net.sf.jabref.logic.layout.LayoutFormatterPreferences;
import net.sf.jabref.logic.layout.LayoutHelper;
import net.sf.jabref.logic.search.SearchQueryHighlightListener;
import net.sf.jabref.model.entry.BibEntry;
Expand Down Expand Up @@ -263,7 +264,8 @@ private void updateLayout() {
StringReader sr = new StringReader(layoutFile.replace("__NEWLINE__", "\n"));
try {
layout = Optional
.of(new LayoutHelper(sr, Globals.prefs, Globals.journalAbbreviationLoader).getLayoutFromText());
.of(new LayoutHelper(sr, LayoutFormatterPreferences.fromPreferences(Globals.prefs,
Globals.journalAbbreviationLoader)).getLayoutFromText());
} catch (IOException e) {
layout = Optional.empty();
LOGGER.debug("no layout could be set", e);
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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/StringDialog.java
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Expand Up @@ -48,7 +48,6 @@
import net.sf.jabref.Globals;
import net.sf.jabref.gui.actions.Actions;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.undo.UndoableInsertString;
import net.sf.jabref.gui.undo.UndoableRemoveString;
Expand All @@ -57,6 +56,7 @@
import net.sf.jabref.logic.bibtex.LatexFieldFormatter;
import net.sf.jabref.logic.bibtex.LatexFieldFormatterPreferences;
import net.sf.jabref.logic.bibtex.comparator.BibtexStringComparator;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.database.BibDatabase;
import net.sf.jabref.model.database.KeyCollisionException;
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Expand Up @@ -79,7 +79,6 @@
import net.sf.jabref.gui.fieldeditors.JTextAreaWithHighlighting;
import net.sf.jabref.gui.fieldeditors.TextField;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.menus.ChangeEntryTypeMenu;
import net.sf.jabref.gui.undo.NamedCompound;
Expand All @@ -97,6 +96,7 @@
import net.sf.jabref.logic.bibtex.BibEntryWriter;
import net.sf.jabref.logic.bibtex.LatexFieldFormatter;
import net.sf.jabref.logic.bibtex.LatexFieldFormatterPreferences;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.labelpattern.LabelPatternUtil;
import net.sf.jabref.logic.search.SearchQueryHighlightListener;
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Expand Up @@ -40,9 +40,9 @@
import net.sf.jabref.Globals;
import net.sf.jabref.gui.JabRefFrame;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.util.FocusRequester;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;

import ca.odell.glazedlists.gui.TableFormat;
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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/groups/GroupSelector.java
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Expand Up @@ -65,7 +65,6 @@
import net.sf.jabref.gui.SidePaneComponent;
import net.sf.jabref.gui.SidePaneManager;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.maintable.MainTableDataModel;
import net.sf.jabref.gui.undo.NamedCompound;
import net.sf.jabref.gui.worker.AbstractWorker;
Expand All @@ -74,6 +73,7 @@
import net.sf.jabref.logic.groups.EntriesGroupChange;
import net.sf.jabref.logic.groups.GroupTreeNode;
import net.sf.jabref.logic.groups.MoveGroupChange;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.search.SearchMatcher;
import net.sf.jabref.logic.search.matchers.MatcherSet;
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1 change: 1 addition & 0 deletions src/main/java/net/sf/jabref/gui/help/HelpAction.java
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Expand Up @@ -27,6 +27,7 @@
import net.sf.jabref.gui.IconTheme;
import net.sf.jabref.gui.actions.MnemonicAwareAction;
import net.sf.jabref.gui.desktop.JabRefDesktop;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.preferences.JabRefPreferences;

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Expand Up @@ -61,9 +61,9 @@
import net.sf.jabref.gui.IconTheme;
import net.sf.jabref.gui.JabRefFrame;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.net.MonitoredURLDownload;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.journals.Abbreviation;
import net.sf.jabref.logic.journals.JournalAbbreviationLoader;
import net.sf.jabref.logic.journals.JournalAbbreviationPreferences;
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Expand Up @@ -35,7 +35,7 @@
import net.sf.jabref.gui.BasePanel;
import net.sf.jabref.gui.IconTheme;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.labelpattern.AbstractLabelPattern;
import net.sf.jabref.logic.labelpattern.DatabaseLabelPattern;
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Expand Up @@ -35,6 +35,7 @@
import net.sf.jabref.JabRefExecutorService;
import net.sf.jabref.JabRefGUI;
import net.sf.jabref.external.ExternalFileMenuItem;
import net.sf.jabref.external.ExternalFileType;
import net.sf.jabref.gui.BasePanel;
import net.sf.jabref.gui.BasePanelMode;
import net.sf.jabref.gui.FileListEntry;
Expand Down Expand Up @@ -318,7 +319,7 @@ public void mouseClicked(MouseEvent e) {
}
if (flEntry != null) {
ExternalFileMenuItem item = new ExternalFileMenuItem(panel.frame(), entry, "",
flEntry.link, flEntry.type.get().getIcon(),
flEntry.link, flEntry.type.map(ExternalFileType::getIcon).orElse(null),
panel.getBibDatabaseContext(), flEntry.type);
boolean success = item.openLink();
if (!success) {
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Expand Up @@ -53,10 +53,11 @@
import net.sf.jabref.gui.SidePaneManager;
import net.sf.jabref.gui.actions.BrowseAction;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.worker.AbstractWorker;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.layout.LayoutFormatterPreferences;
import net.sf.jabref.logic.openoffice.OOBibStyle;
import net.sf.jabref.logic.openoffice.OpenOfficePreferences;
import net.sf.jabref.logic.openoffice.StyleLoader;
Expand Down Expand Up @@ -126,7 +127,8 @@ private OpenOfficePanel() {
update = new JButton(IconTheme.JabRefIcon.REFRESH.getSmallIcon());
update.setToolTipText(Localization.lang("Sync OpenOffice/LibreOffice bibliography"));
preferences = new OpenOfficePreferences(Globals.prefs);
loader = new StyleLoader(preferences, Globals.prefs, Globals.journalAbbreviationLoader,
loader = new StyleLoader(preferences,
LayoutFormatterPreferences.fromPreferences(Globals.prefs, Globals.journalAbbreviationLoader),
Globals.prefs.getDefaultEncoding());
}

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Expand Up @@ -380,7 +380,7 @@ private void setupPrevEntry() {
prevEntry.setField(FieldName.YEAR, "2008");
prevEntry.setField(FieldName.JOURNAL, "BibTeX journal");
prevEntry.setField(FieldName.PUBLISHER, "JabRef publishing");
prevEntry.setField("address", "Trondheim");
prevEntry.setField(FieldName.ADDRESS, "Trondheim");
prevEntry.setField("www", "https://github.com/JabRef");
}

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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/preftabs/AdvancedTab.java
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Expand Up @@ -27,8 +27,8 @@

import net.sf.jabref.Globals;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.remote.JabRefMessageHandler;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.journals.JournalAbbreviationPreferences;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.remote.RemotePreferences;
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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/preftabs/FileTab.java
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Expand Up @@ -35,7 +35,7 @@
import net.sf.jabref.gui.JabRefFrame;
import net.sf.jabref.gui.actions.BrowseAction;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.entry.FieldName;
import net.sf.jabref.preferences.JabRefPreferences;
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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/preftabs/GeneralTab.java
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Expand Up @@ -34,7 +34,7 @@

import net.sf.jabref.Globals;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Encodings;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.database.BibDatabaseMode;
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Expand Up @@ -38,7 +38,7 @@
import net.sf.jabref.gui.IconTheme;
import net.sf.jabref.gui.OSXCompatibleToolbar;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.layout.format.NameFormatter;
import net.sf.jabref.preferences.JabRefPreferences;
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Expand Up @@ -52,7 +52,7 @@
import net.sf.jabref.gui.JabRefFrame;
import net.sf.jabref.gui.OSXCompatibleToolbar;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.entry.BibtexSingleField;
import net.sf.jabref.model.entry.InternalBibtexFields;
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2 changes: 1 addition & 1 deletion src/main/java/net/sf/jabref/gui/search/SearchBar.java
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Expand Up @@ -39,11 +39,11 @@
import net.sf.jabref.gui.WrapLayout;
import net.sf.jabref.gui.autocompleter.AutoCompleteSupport;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.maintable.MainTableDataModel;
import net.sf.jabref.gui.util.component.JTextFieldWithUnfocusedText;
import net.sf.jabref.gui.worker.AbstractWorker;
import net.sf.jabref.logic.autocompleter.AutoCompleter;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.search.SearchQuery;
import net.sf.jabref.logic.search.SearchQueryHighlightObservable;
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Expand Up @@ -47,10 +47,10 @@
import net.sf.jabref.gui.FileDialogs;
import net.sf.jabref.gui.JabRefFrame;
import net.sf.jabref.gui.help.HelpAction;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.gui.keyboard.KeyBinding;
import net.sf.jabref.gui.util.FocusRequester;
import net.sf.jabref.importer.fileformat.ImportFormat;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.preferences.JabRefPreferences;

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Expand Up @@ -43,13 +43,13 @@

import net.sf.jabref.Globals;
import net.sf.jabref.gui.FetcherPreviewDialog;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.importer.ImportInspector;
import net.sf.jabref.importer.OutputPrinter;
import net.sf.jabref.importer.fileformat.BibtexParser;
import net.sf.jabref.logic.formatter.bibtexfields.HtmlToLatexFormatter;
import net.sf.jabref.logic.formatter.bibtexfields.UnitsToLatexFormatter;
import net.sf.jabref.logic.formatter.casechanger.ProtectTermsFormatter;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.logic.net.URLDownload;
import net.sf.jabref.model.entry.BibEntry;
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Expand Up @@ -39,11 +39,11 @@
import javax.xml.stream.XMLStreamException;
import javax.xml.stream.XMLStreamReader;

import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.importer.ImportInspector;
import net.sf.jabref.importer.OutputPrinter;
import net.sf.jabref.importer.ParserResult;
import net.sf.jabref.importer.fileformat.BibtexParser;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.database.BibDatabase;
import net.sf.jabref.model.entry.BibEntry;
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Expand Up @@ -26,10 +26,10 @@
import javax.swing.JPanel;

import net.sf.jabref.Globals;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.importer.ImportInspector;
import net.sf.jabref.importer.OutputPrinter;
import net.sf.jabref.logic.formatter.bibtexfields.NormalizeNamesFormatter;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.net.URLDownload;
import net.sf.jabref.model.entry.BibEntry;
import net.sf.jabref.model.entry.FieldName;
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Expand Up @@ -25,10 +25,10 @@
import javax.swing.JPanel;

import net.sf.jabref.Globals;
import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.importer.ImportInspector;
import net.sf.jabref.importer.OutputPrinter;
import net.sf.jabref.importer.fileformat.BibtexParser;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.net.URLDownload;
import net.sf.jabref.model.DuplicateCheck;
import net.sf.jabref.model.entry.BibEntry;
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Expand Up @@ -18,10 +18,10 @@
import javax.swing.JOptionPane;
import javax.swing.JPanel;

import net.sf.jabref.gui.help.HelpFile;
import net.sf.jabref.importer.ImportInspector;
import net.sf.jabref.importer.OutputPrinter;
import net.sf.jabref.importer.fileformat.JSONEntryParser;
import net.sf.jabref.logic.help.HelpFile;
import net.sf.jabref.logic.l10n.Localization;
import net.sf.jabref.model.entry.BibEntry;

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