Flexible subject reading #73
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ageorgou
requested changes
Sep 7, 2020
| @@ -253,3 +261,10 @@ def determine_trial_times(self): | |||
| end = None # determine final 'end' later from speed data | |||
| trial_times.append((start, end)) | |||
| return trial_times | |||
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| def get_subject_info(self): | |||
| return "\n".join( | |||
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I wonder whether ". ".join(... is better (to have everything in a single line. It could get quite long if we have a lot of information though.
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| # If both metadata and header have a non-empty subject entry, the header gets priority. | ||
| # If neither have an entry, pynwb defaults to not writing a subject field in the file. | ||
| if self.subject: | ||
| self.add_subject(self.subject) |
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Are we sure that this way prioritises the header over the metadata? If they both have subject information, does the second call to add_subject not do anything, or does it fail (or overwrite it with the second argument)?
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This includes all non-empty information from the
[BIOLOGY INFORMATION]section provided in headers of non-legacy LabView versions under theSubjectgroup in the NWB file. If any of these header fields are non-empty, they will be written as a row inSubject, and any subject-related entries in the metadata will be ignored as a consequence.Addresses one of the remaining points in #23 .