Update README.md and requirements.txt about snakemake 8 and using the plugin #68
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python_package | |
| on: | |
| push: | |
| branches: [ master, development ] | |
| pull_request: | |
| branches: [ master, development ] | |
| jobs: | |
| Formatting: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ 3.7, 3.8, 3.9, '3.10' ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Check formatting with black | |
| run: | | |
| python -m pip install black | |
| black --check . | |
| Linting: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ 3.7, 3.8, 3.9, '3.10' ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: make install-ci | |
| - name: Lint with flake8 | |
| run: make lint | |
| Testing: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ 3.7, 3.8, 3.9, '3.10' ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: make install-ci | |
| - name: Test and generate coverage report with pytest | |
| run: make test-ci | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./tests/coverage.xml | |
| flags: unittests | |
| fail_ci_if_error: false |