A python package that will take the output file from an analytical instrument at the USDA-ARS Grassland Soil Water Research Laboratory in Temple, TX.
The cfa.py module is defined by two classes, one for each of two instruments at the USDA Grassland Soil and Water Research Laboratory in Temple Texas.
The San class is to be used with output data from an Skalar San++ Continious Flow Analyzer (CFA). The first of the two functions within this class is used for results from a Deionized Water Extraction (DI) and the Haney Three Acid Extraction (H3A. Both extractions analyze Nitrate/Nitrite (NO3/NO2), Phosphate (PO4), and Ammonium (NH4). The second function is for results of a KCL extraction where only NO3/NO2 & NH4 are analyzed. Both functions will output a Dataframe of the same format.
The AA500 class is another CFA at the station an AA500. The output of this class's function is a dictionary containing the instrument "metadata" and a Dataframe with the analytical data
The dry_combusion_cn.py module is defined by three classes, one for each of three Dry Combustion Analyzers at the USDA Grassland Soil and Water Research Laboratory in Temple Texas.
The ELIII class is to be used with data from an Elementar VARIO EL III for Carbon (C), Nitrogen (N), and Sulfur (S). The output of this class's data function is a dataframe containing the (C, N, S) data from a single run.
The MaxCube class is to be used with data from an Elementar VARIO Max Cube for (C, N) analysis. The output of this class's data function is a dataframe containing the (C, N) data from a single run.
The ThermoFlash class is to be used with data from an Thermo Scientific Flash for (C, N) analysis. The outputs of this class's data function are three dictionaries: Instrumental Metadara, Nitrogen Results, and Carbon Results of a single sample within a file.
The ghg.py module is defined by a single class to for one instrument at the USDA Grassland Soil and Water Research Laboratory in Temple Texas.
The instrument is an SCION456 Gas Chromatogram (GC) Greenhouse Gas Analyzer (GHG). The analytes are Carbon Dioxide (CO2), Methane (CH4), and Nitrous Oxide (N2O). The SCION456 class's function will read a csv file containing the analytical and instrumental metadata from a single sample run file. The outputs are four dictionaries: Instrumental metadata, CO2 Results, CH4 Results, & N2O Results.
The icp.py module is defined by two classes, one for each of two instruments at the USDA Grassland Soil and Water Research Laboratory in Temple Texas.
The agilent class is to be used with data from an Agilent 5110 Inductively Coupled Plasma - Optical Emission Spectrometer (ICP_OES). The output of this class's data function is a dataframe containing the analytical data for the following elements: Aluminium, Calcium, Copper, Iron, Potassium, Magnesium, Manganese, Sodium, Phosphorus, Sulfur, and Zinc.
The varian class is to be used with data from a Varian Vista MPX ICP-OES that is no longer on station. The output of this class's data function is a dataframe containing the analytical data for the following elements: Aluminium, Arsenic, Calcium, Iron, Potassium, Magnesium, Manganese, Phosphorus, Sulfur, Zinc, and Ytrium
The liquid_toc.py module is defined by two classes, one for each of two instruments at the USDA Grassland Soil and Water Research Laboratory in Temple Texas.
The FormacsTOC class is to be used with data exported from the Skalar FORMACS TOC/TN analyzer. The Data function will return two items a pandas dataframe containing the analytical data and a dictionary containing the instrument "metadata" of the run.
The ---- class like the first is for data from an Elementar Liquid TOC/TN Analyzer. THe output of this class's data function will match the output of the FormacsTOC.data()
Current instruments supported by module:
cfa.py: Skalar San ++ Continious Flow Analyzer Analytes: Nitrate/Nitrite, Phosphate, Ammonium AA500 Continious Flow Analyzer Analytes: Nitrate/Nitrite, Phosphate, Ammonium
dry_combustion_cn.py: Elementar Vario ELIII Dry Combustion Analyzer Analytes: Carbon, Nitrogen Elementar Vario Max Cube Dry Combustion Analyzer Analytes: Carbon, Nitrogen Thermo Flash Dry Combustion Analyzer Analytes: Carbon, Nitrogen
ghg.py: SCION456 Greenhouse Gas Gas Chromatograph Analyzer Analytes: Carbon Dioxide, Methane, Nitrious Oxide
icp.py: Varian Vista MPX Inductively Coupled Plasma - Optical Emission Spetrometer Analytes: Aluminium, Arsenic, Calcium, Iron, Potassium, Magnesium, Manganese, Phosphorus, Sulfur, Zinc, and Ytrium Agilient 5110 Inductively Coupled Plasma - Optical Emission Spectrometer Analytes: Aluminium, Calcium, Copper, Iron, Potassium, Magnesium, Manganese, Sodium, Phosphorus, Sulfur, and Zinc
liquid_toc.py: Skalar Formacs Total Organic Carbon/Total Nitrogen liquid Analyzer Analytes: Total Carbon, Total Organic Carbon, Inorganic Carbon, Total Nitrogen