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1. st_pipeline st_pipeline Public

   Forked from jfnavarro/st_pipeline

   ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

   Python 83 31

2. st_spot_detector st_spot_detector Public

   A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.

   JavaScript 24 10

3. std-nb std-nb Public

   Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018

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4. st_viewer st_viewer Public

   Forked from jfnavarro/st_viewer

   A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

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5. std-poisson std-poisson Public

   Poisson regression for Spatial Transcriptomics data as described in Berglund et al. 2018

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6. st_analysis st_analysis Public

   Forked from jfnavarro/st_analysis

   A toolkit for visualisation and analysis of Spatial Transcriptomics datasets

   Python 5 5