Pushing changes from main back into dev branch

.github/workflows/main-01-pkgdown.yml

@@ -6,7 +6,7 @@ on:
   workflow_dispatch:
     inputs:
       trigger_next:
-        description: 'Whether to run the subsequent workflows after triggering this one manully.'
+        description: 'Whether to run the subsequent workflows after triggering this one manually.'
         required: false
         default: false
   push:
@@ -46,51 +46,33 @@ jobs:
           echo GITHUB_SHA        = $GITHUB_SHA
           echo GITHUB_REF        = $GITHUB_REF
 
+      - uses: r-lib/actions/setup-pandoc@v2
+
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: 'release'
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - name: Query dependencies
-        run: |
-          install.packages("remotes")
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        uses: actions/cache@v4
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: macOS-r-4.4-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: macOS-r-4.4-1-
+          extra-packages: any::pkgdown, local::.
+          needs: website
 
-      - name: Install dependencies
-        run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_dev("pkgdown")
-        shell: Rscript {0}
-
-      - name: Session info
-        run: |
-          options(width = 100)
-          pkgs <- installed.packages()[, "Package"]
-          sessioninfo::session_info(pkgs, include_base = TRUE)
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
 
-      - name: Install package
-        run: R CMD INSTALL .
-
-      - name: Deploy package
-        run: |
-          git config --local user.email "actions@github.com"
-          git config --local user.name "GitHub Actions"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
+      - name: Deploy to GitHub pages
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs
 
       - name: Trigger next workflow
         if: ${{ (github.event_name != 'workflow_dispatch' && success()) || (github.event_name == 'workflow_dispatch' && github.event.inputs.trigger_next && success()) }}
-        uses: peter-evans/repository-dispatch@v1
+        uses: peter-evans/repository-dispatch@v3
         with:
           token: ${{ secrets.REPO_GHA_PAT }}
           repository: StevenMMortimer/salesforcer
@@ -99,7 +81,7 @@ jobs:
 
       - name: Set final R-CMD-check status
         if: ${{ (github.event_name != 'workflow_dispatch' && failure()) }}
-        uses: peter-evans/repository-dispatch@v1
+        uses: peter-evans/repository-dispatch@v3
         with:
           token: ${{ secrets.REPO_GHA_PAT }}
           repository: StevenMMortimer/salesforcer

.github/workflows/main-02-test-coverage.yml

@@ -4,7 +4,7 @@ on:
   workflow_dispatch:
     inputs:
       trigger_next:
-        description: 'Whether to run the subsequent workflows after triggering this one manully.'
+        description: 'Whether to run the subsequent workflows after triggering this one manually.'
         required: false
         default: false
   repository_dispatch:
@@ -16,7 +16,7 @@ on:
 jobs:
   test-coverage:
 
-    runs-on: macOS-latest
+    runs-on: ubuntu-latest
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -52,41 +52,46 @@ jobs:
           r-version: 'release'
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-pandoc@v2
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr, any::xml2
+          needs: coverage
 
-      - name: Query dependencies
+      - name: Test coverage
         run: |
-          install.packages("remotes")
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          cov <- covr::package_coverage(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - name: Cache R packages
-        uses: actions/cache@v4
+      - uses: codecov/codecov-action@v4
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: macOS-r-4.4-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: macOS-r-4.4-1-
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
 
-      - name: Install dependencies
+      - name: Show testthat output
+        if: always()
         run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("covr")
-        shell: Rscript {0}
+          ## --------------------------------------------------------------------
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
 
-      - name: Session info
-        run: |
-          options(width = 100)
-          pkgs <- installed.packages()[, "Package"]
-          sessioninfo::session_info(pkgs, include_base = TRUE)
-        shell: Rscript {0}
-
-      - name: Test coverage
-        run: covr::codecov(quiet=FALSE)
-        shell: Rscript {0}
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package
 
       - name: Trigger next workflow
         if: ${{ (github.event_name != 'workflow_dispatch' && success()) || (github.event_name == 'workflow_dispatch' && github.event.inputs.trigger_next && success()) }}
-        uses: peter-evans/repository-dispatch@v1
+        uses: peter-evans/repository-dispatch@v3
         with:
           token: ${{ secrets.REPO_GHA_PAT }}
           repository: StevenMMortimer/salesforcer
@@ -95,7 +100,7 @@ jobs:
 
       - name: Set final R-CMD-check status
         if: ${{ (github.event_name != 'workflow_dispatch' && failure()) }}
-        uses: peter-evans/repository-dispatch@v1
+        uses: peter-evans/repository-dispatch@v3
         with:
           token: ${{ secrets.REPO_GHA_PAT }}
           repository: StevenMMortimer/salesforcer

.github/workflows/main-03-R-CMD-check-mac.yml

@@ -4,7 +4,7 @@ on:
   workflow_dispatch:
     inputs:
       trigger_next:
-        description: 'Whether to run the subsequent workflows after triggering this one manully.'
+        description: 'Whether to run the subsequent workflows after triggering this one manually.'
         required: false
         default: false
   repository_dispatch:
@@ -22,7 +22,7 @@ jobs:
       max-parallel: 1
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
+          - {os: macOS-latest, r: 'release'}
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
@@ -46,65 +46,19 @@ jobs:
           use-public-rspm: true
           r-version: ${{ matrix.config.r }}
 
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - name: Query dependencies
-        run: |
-          install.packages("remotes")
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        if: runner.os != 'Windows'
-        uses: actions/cache@v4
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-r-${{ matrix.config.r }}-3-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-3-
-
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-        run: |
-          Rscript -e "remotes::install_github('r-hub/sysreqs')"
-          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-          sudo -s eval "$sysreqs"
-
-      - name: Install dependencies
-        run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-        shell: Rscript {0}
-
-      - name: Session info
-        run: |
-          options(width = 100)
-          pkgs <- installed.packages()[, "Package"]
-          sessioninfo::session_info(pkgs, include_base = TRUE)
-        shell: Rscript {0}
-
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_REMOTE_: false
-        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
-
-      - name: Show testthat output
-        if: always()
-        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@v4
+      - uses: r-lib/actions/check-r-package@v2
         with:
-          name: ${{ runner.os }}-r-${{ matrix.config.r }}-results
-          path: check
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
 
       - name: Trigger next workflow
         if: ${{ (github.event_name != 'workflow_dispatch' && success()) || (github.event_name == 'workflow_dispatch' && github.event.inputs.trigger_next && success()) }}
-        uses: peter-evans/repository-dispatch@v1
+        uses: peter-evans/repository-dispatch@v3
         with:
           token: ${{ secrets.REPO_GHA_PAT }}
           repository: StevenMMortimer/salesforcer
@@ -113,7 +67,7 @@ jobs:
 
       - name: Set final R-CMD-check status
         if: ${{ (github.event_name != 'workflow_dispatch' && failure()) }}
-        uses: peter-evans/repository-dispatch@v1
+        uses: peter-evans/repository-dispatch@v3
         with:
           token: ${{ secrets.REPO_GHA_PAT }}
           repository: StevenMMortimer/salesforcer