PORC

This code predicts genetic codes with an alternative normalization scheme to that implemented in the program FACIL.

PORC was used to predict a few new genetic codes in cilates using MMETSP transcriptomes, recorded as genetic codes 27-29 in NCBI Genetic Codes, and also in analyses of karyorelict genetic codes.

Installation

git clone https://github.com/Swart-lab/PORC/

cd PORC

PORC can be run with the following command:

./PORC.sh $PATH_TO_PORC_SCRIPTS HMMER_PROCESSES GENOME_FILE_PREFIX GENOME_FILE_SUFFIX PFAM_PATH

See comments in PORC.sh for more details on how to run.

Name		Name	Last commit message	Last commit date
Latest commit History 26 Commits
example		example
LICENSE		LICENSE
PORC.sh		PORC.sh
README.md		README.md
env.yml		env.yml
porc_cod_usage.py		porc_cod_usage.py
six_frame_pep_and_cds.py		six_frame_pep_and_cds.py