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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology
README.md

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 21 9

  2. SBOL-visual SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 37 16

  3. pySBOL3 pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 40 17

  4. sboljs3 sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 6 1

  5. SBOL-utilities SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 18 29

  6. SBOL-examples SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 3 4

Repositories

Showing 10 of 57 repositories
  • SBOLCanvas Public
    SynBioDex/SBOLCanvas’s past year of commit activity
    HTML 14 Apache-2.0 6 31 0 Updated Sep 26, 2025
  • SeqTrainer Public

    ML training on SBOL data

    SynBioDex/SeqTrainer’s past year of commit activity
    Jupyter Notebook 1 MIT 0 2 0 Updated Sep 26, 2025
  • SBOL-Converter Public

    SBOL Java Converter

    SynBioDex/SBOL-Converter’s past year of commit activity
    Java 1 Apache-2.0 0 9 0 Updated Sep 17, 2025
  • libSBOLj3 Public Forked from goksel/libSBOLj3_moved_to_SynBioDex

    A Java library for the Synthetic Biology Open Language version 3

    SynBioDex/libSBOLj3’s past year of commit activity
    Java 1 Apache-2.0 3 5 0 Updated Sep 16, 2025
  • SbolStandardWebsite Public
    SynBioDex/SbolStandardWebsite’s past year of commit activity
    TeX 4 CC0-1.0 3 13 0 Updated Sep 3, 2025
  • SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    SynBioDex/SBOL-utilities’s past year of commit activity
    JavaScript 18 MIT 29 107 (2 issues need help) 14 Updated Aug 27, 2025
  • Excel-to-SBOL Public
    SynBioDex/Excel-to-SBOL’s past year of commit activity
    Python 4 BSD-3-Clause 8 20 0 Updated Aug 21, 2025
  • Community-Media Public

    This repository is intended to be a "one stop" location for finding all of the publicly presented papers, posters, and talks that have been given on SBOL.

    SynBioDex/Community-Media’s past year of commit activity
    Jupyter Notebook 9 CC0-1.0 13 3 0 Updated Aug 6, 2025
  • libSBOLj Public

    Java Library for Synthetic Biology Open Language (SBOL)

    SynBioDex/libSBOLj’s past year of commit activity
    Java 40 Apache-2.0 25 64 8 Updated Jul 12, 2025
  • SBOL-Notebooks Public

    A repository containing Jupyter Notebooks for SBOL

    SynBioDex/SBOL-Notebooks’s past year of commit activity
    Jupyter Notebook 0 1 16 5 Updated Jul 4, 2025
View all repositories

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