Corrected .tsv files

SysBioChalmers · Aug 31, 2021 · 84ca924 · 84ca924
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diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -309788,8 +309788,6 @@
       - id: "ENSG00000143870"
     - !!omap
       - id: "ENSG00000143882"
-    - !!omap
-      - id: "ENSG00000143891"
     - !!omap
       - id: "ENSG00000143921"
     - !!omap

diff --git a/model/genes.tsv b/model/genes.tsv
@@ -1948,7 +1948,6 @@ genes	geneENSTID	geneENSPID	geneUniProtID	geneSymbols	geneEntrezID	geneNames	gen
 "ENSG00000143851"	"ENST00000367279;ENST00000309017;ENST00000495688;ENST00000462815;ENST00000496197;ENST00000480836;ENST00000477554;ENST00000492977;ENST00000477625;ENST00000629151;ENST00000479092;ENST00000476061;ENST00000464870;ENST00000467283;ENST00000435759;ENST00000486116;ENST00000491584;ENST00000492451;ENST00000468385"	"ENSP00000356248;ENSP00000309116;ENSP00000420506;ENSP00000419196;ENSP00000419523;ENSP00000419733;ENSP00000418416;ENSP00000418129;ENSP00000485691;ENSP00000419993;ENSP00000420434;ENSP00000418837;ENSP00000406042;ENSP00000417350;ENSP00000417410"	"P35236"	"PTPN7"	"5778"	"protein tyrosine phosphatase non-receptor type 7"	"HEPTP;LC-PTP"
 "ENSG00000143870"	"ENST00000272227;ENST00000404371;ENST00000404824;ENST00000489662;ENST00000458536;ENST00000617249;ENST00000540494;ENST00000381611"	"ENSP00000272227;ENSP00000385385;ENSP00000384459;ENSP00000389558;ENSP00000481892;ENSP00000438778;ENSP00000371024"	"Q15084"	"PDIA6"	"10130"	"protein disulfide isomerase family A member 6"	"ERp5;P5;TXNDC7"
 "ENSG00000143882"	"ENST00000648362;ENST00000272238;ENST00000381661;ENST00000635370;ENST00000480289"	"ENSP00000497038;ENSP00000272238;ENSP00000371077;ENSP00000489280"	"Q8NEY4"	"ATP6V1C2"	"245973"	"ATPase H+ transporting V1 subunit C2"	"ATP6C2;VMA5"
-"ENSG00000143891"	"ENST00000272252;ENST00000427858;ENST00000410063;ENST00000444351;ENST00000434934"	"ENSP00000272252;ENSP00000386233;ENSP00000409083;ENSP00000399473"	"Q96C23"	"GALM"	"130589"	"galactose mutarotase"	""
 "ENSG00000143921"	"ENST00000644611;ENST00000643284;ENST00000272286"	"ENSP00000495423;ENSP00000272286"	"Q9H221"	"ABCG8"	"64241"	"ATP binding cassette subfamily G member 8"	"GBD4"
 "ENSG00000143933"	"ENST00000272298;ENST00000460218;ENST00000652974;ENST00000655450;ENST00000432899;ENST00000456319;ENST00000670593;ENST00000668667;ENST00000656538;ENST00000655728;ENST00000482532;ENST00000409563;ENST00000484408;ENST00000489742;ENST00000628793"	"ENSP00000272298;ENSP00000499369;ENSP00000499266;ENSP00000406112;ENSP00000411440;ENSP00000499706;ENSP00000499357;ENSP00000499656;ENSP00000387065;ENSP00000499468;ENSP00000499354;ENSP00000486952"	"P0DP24"	"CALM2"	"805"	"calmodulin 2"	"CAMII;PHKD"
 "ENSG00000144035"	"ENST00000272425"	"ENSP00000272425"	"Q9UHE5"	"NAT8"	"9027"	"N-acetyltransferase 8 (putative)"	"ATase2;GLA;Hcml1;TSC501"

diff --git a/model/metabolites.tsv b/model/metabolites.tsv
@@ -2241,8 +2241,6 @@ mets	metsNoComp	metBiGGID	metKEGGID	metHMDBID	metChEBIID	metPubChemID	metLipidMa
 "MAM01385s"	"MAM01385"	"caro"	""	""	""	""	"LMPR01070000"	""	""	"caro"	"MNXM614"	"m01385s"	"m01385s"
 "MAM01386c"	"MAM01386"	""	""	""	""	""	""	"CE4722"	""	"CE4722"	"MNXM152651"	"m01386c"	"m01386c"
 "MAM01387c"	"MAM01387"	""	""	""	""	"4424653"	""	"CE2915"	""	"CE2915"	"MNXM163311"	"m01387c"	"m01387c"
-"MAM01388c"	"MAM01388"	""	"C00221"	""	"CHEBI:15903"	""	""	""	""	"M01388"	"MNXM105"	"m01388c"	"m01388c"
-"MAM01389c"	"MAM01389"	""	"C01172"	""	"CHEBI:17719"	""	""	""	""	"M01389"	"MNXM508"	"m01389c"	"m01389c"
 "MAM01390c"	"MAM01390"	"mpdol__L"	"C05860"	""	"CHEBI:18396"	""	""	""	""	"mpdol_L"	"MNXM148107"	"m01390c"	"m01390c"
 "MAM01391c"	"MAM01391"	"acgbgbside_hs"	""	""	""	""	""	""	""	"acgbgbside_hs"	"MNXM7110"	"m01391c"	"m01391c"
 "MAM01391g"	"MAM01391"	"acgbgbside_hs"	""	""	""	""	""	""	""	"acgbgbside_hs"	"MNXM7110"	"m01391g"	"m01391g"

diff --git a/model/reactions.tsv b/model/reactions.tsv
@@ -31,11 +31,6 @@ rxns	rxnKEGGID	rxnBiGGID	rxnEHMNID	rxnHepatoNET1ID	rxnREACTOMEID	rxnRecon3DID	rx
 "MAR04521"	"R00303"	"G6PPer"	""	"r0396"	""	"G6PPer"	"MNXR99912"	"HMR_4521"	"RCR11028"	""	0	""	""	"HMR_4521"
 "MAR06410"	"R01699"	""	"R01699M"	"r0383"	""	"r0383"	"MNXR102427;MNXR107129"	"HMR_6410"	"RCR10446"	""	0	""	""	"HMR_6410"
 "MAR06412"	"R02569"	""	"R02569C"	"r0555"	""	"r0555"	"MNXR102430;MNXR107584"	"HMR_6412"	"RCR14187"	""	0	""	""	"HMR_6412"
-"MAR07745"	"R01602"	""	""	""	""	"HMR_7745"	"MNXR107082"	"HMR_7745"	"RCR10447"	""	0	""	""	"HMR_7745"
-"MAR07746"	"R01600"	""	""	""	""	"HMR_7746"	"MNXR107081"	"HMR_7746"	"RCR10448"	""	0	""	""	"HMR_7746"
-"MAR07747"	"R09086"	""	""	""	""	"HMR_7747"	"MNXR112530"	"HMR_7747"	"RCR10449"	""	0	""	""	"HMR_7747"
-"MAR07748"	"R02739"	""	""	""	""	"HMR_7748"	"MNXR99911"	"HMR_7748"	"RCR10277"	""	0	""	""	"HMR_7748"
-"MAR07749"	"R03321"	""	""	""	""	"HMR_7749"	"MNXR99910"	"HMR_7749"	"RCR14188"	""	0	""	""	"HMR_7749"
 "MAR08360"	""	"CAt7r"	""	""	""	"CAT2p"	"MNXR96461"	"HMR_8360"	"RCR11029"	""	0	""	""	"HMR_8360"
 "MAR08652"	""	"CBPS"	""	""	""	"CBPPer"	"MNXR96485"	"HMR_8652"	"RCR11030"	""	0	""	""	"HMR_8652"
 "MAR08757"	""	"ETOHtx"	""	""	""	"ETOHMO"	"MNXR97980"	"HMR_8757"	"RCR11031"	""	0	""	""	"HMR_8757"