similar reactions with different stoichiometry

[johan-gson]

Description of the issue:

Some reaction pairs are very similar, but with different stoichiometry, which is suspicious:
We should figure out which is right.
The third column is if they have the same GPR.
example (same GPR):
'2 ATP[c] + 2 H2O[c] + sulfate[c] => 2 ADP[c] + 2 H+[c] + 2 Pi[c] + sulfate[s]' 'ATP[c] + H2O[c] + sulfate[c] => ADP[c] + H+[c] + Pi[c] + sulfate[s]'

{'MAR01702'}    {'MAR02283'}    true   
{'MAR01857'}    {'MAR02290'}    true   
{'MAR01861'}    {'MAR02298'}    true   
{'MAR01913'}    {'MAR02304'}    true   
{'MAR04910'}    {'MAR04411'}    false  
{'MAR04912'}    {'MAR04411'}    false  
{'MAR05295'}    {'MAR05429'}    true   
{'MAR06057'}    {'MAR04411'}    false  
{'MAR06406'}    {'MAR01483'}    true   
{'MAR07633'}    {'MAR01442'}    true   
{'MAR07634'}    {'MAR00052'}    true   
{'MAR07635'}    {'MAR00065'}    true   
{'MAR07636'}    {'MAR00334'}    true   
{'MAR07637'}    {'MAR01555'}    true   
{'MAR07667'}    {'MAR00094'}    true   
{'MAR07681'}    {'MAR00058'}    true   
{'MAR07736'}    {'MAR00087'}    true   
{'MAR07737'}    {'MAR01396'}    true   
{'MAR07738'}    {'MAR01314'}    true   
{'MAR08922'}    {'MAR01518'}    true   
{'MAR08930'}    {'MAR01636'}    true   
{'MAR09603'}    {'MAR09873'}    true   
{'MAR09604'}    {'MAR09886'}    true   
{'MAR09613'}    {'MAR09886'}    false  
{'MAR00116'}    {'MAR02300'}    false  

Expected feature/value/output:

How the reaction/metabolite/gene/simulation result should look (cite literature if needed). PLEASE DELETE THIS LINE.

Current feature/value/output:

How the reaction/metabolite/gene/simulation actually looks in the main branch. PLEASE DELETE THIS LINE.

Reproducing these results:

Please attach any Matlab code used . PLEASE DELETE THIS LINE.

I hereby confirm that I have:

• Tested my code on my own computer for running the model
• Done this analysis in the main branch of the repository
• Checked that a similar issue does not exist already

Note: replace [ ] with [X] to check the box. PLEASE DELETE THIS LINE

[Devlin-Moyer]

MAR04910, MAR04411, and MAR04912 were addressed in #568/#600. MAR06057 was not mentioned, but MAR04411 was removed in #600, and MAR04411 was the only potential duplicate of MAR06057 listed here.
MAR05295 was removed in #581
MAR06406 and MAR01483 were removed in #706
I haven't investigated any of the others beyond determining that no other issues or pull requests or anything mention them

[johan-gson]

Nice work cleaning this up, these issues have been around for some time!