refactor: remove recon ids from reaction names

[mihai-sysbio]

Main improvements in this PR:

This PR removes the Recon ids from the reaction name field. As far as I can tell, these are anyway kept in reactions.tsv.

I hereby confirm that I have:

• Tested my code on my own computer for running the model
• Selected develop as a target branch

[haowang-bioinfo]

everything looks good

@mihai-sysbio I wonder how did you modify the 145 reaction names, manually or by regexp?

[mihai-sysbio]

In VS Code I used Find and Replace with this regex

(- id: "MAR\d+"\n +- name: ")RE\d\d\d\d.

to replace with

$1

The way this works is to first finding all reaction (starting with MAR) where the name matches the RE.. pattern. Then, the first part is surrounded by ( ) to become a "captured" group, later to be referenced by $1. This basically replaces the entire find pattern with the first part of the find pattern, thus effectively deleting what is outside the ( ): only the RE.. name.