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Fix Reactions Related To CLYBL #606

Merged
merged 7 commits into from
Jun 8, 2023
Merged

Fix Reactions Related To CLYBL #606

merged 7 commits into from
Jun 8, 2023

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Devlin-Moyer
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Main improvements in this PR:

As discussed in #586:

  • Adds CLYBL (ENSG00000125246) to the GPR of MAR08666
  • Adds PMID:24334609 as a reference for MAR08666
  • Creates new reaction MAR020111 to represent malate synthase activity of CLYBL: MAM02007m + MAM01261m + MAM02040m -> MAM02439m MAM01597m, GPR: ENSG00000125246, reference: PMID:24334609
  • Removes MAR05294 and MAR11421 since neither CLYBL nor any other human enzyme catalyzes those

I hereby confirm that I have:

  • Tested my code on my own computer for running the model
  • Selected develop as a target branch
  • Any removed reactions and metabolites have been moved to the corresponding deprecated identifier lists

@Devlin-Moyer
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(last commit is taking care of merge conflict in deprecated reactions file)

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@haowang-bioinfo haowang-bioinfo left a comment

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nice and clean

@Devlin-Moyer
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(last commit resolved merge conflict in deprecated reactions file)

@haowang-bioinfo haowang-bioinfo merged commit a279e97 into SysBioChalmers:develop Jun 8, 2023
@Devlin-Moyer Devlin-Moyer deleted the fix/CLYBL_rxns branch June 8, 2023 18:44
haowang-bioinfo added a commit that referenced this pull request Jun 13, 2023
- This commit includes fixing typos, and reverting back to original way of extracting subsystem values
haowang-bioinfo added a commit that referenced this pull request Jun 16, 2023
- This commit includes fixing typos, and reverting back to original way of extracting subsystem values
@haowang-bioinfo haowang-bioinfo mentioned this pull request Jun 17, 2023
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2 participants