fix: remove genes only expressed in peroxisome from beta-oxidation reactions in mitochondria

[haowang-bioinfo]

Main improvements in this PR:

according to the table reported by #767, this PR remove genes expressed only in peroxisome from GPRs of beta-oxidation reactions in mitochondria. The specific changes are:

• add code, which is inspired by Duplicate Beta-Oxidation Reactions for (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA  #746, for checking genes with mismatched compartment assignment
• remove ENSG00000115425 from MAR02028, MAR02148, MAR02149, MAR02183, MAR02187, MAR02207, respectively
• remove ENSG00000113790 from MAR03297, MAR03374, MAR03378, MAR03379, respectively
• remove ENSG00000060971 from MAR02381 and modify the GPR to ENSG00000138029 or ENSG00000167315, as reported in ACAA1 should not be in the GPR of MAR02381 #759

Note that modifications to MAR03269 and MAR03380 had already been addressed by #760

I hereby confirm that I have:

• Tested my code on my own computer for running the model
• Selected develop as a target branch
• Any removed reactions and metabolites have been moved to the corresponding deprecated identifier lists