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Remove MAR00965 and Fix GPR of MAR00970 #794

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merged 5 commits into from
Jan 8, 2024
Merged

Remove MAR00965 and Fix GPR of MAR00970 #794

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0a8006c
fix: removed MAR00965
Devlin-Moyer Dec 18, 2023
c341127
fix: corrected GPR of MAR00970
Devlin-Moyer Dec 18, 2023
c09f91e
chore: merge in latest develop branch
Devlin-Moyer Dec 28, 2023
7bab1e9
fix: standardized format of new GPR for MAR00970
Devlin-Moyer Dec 31, 2023
f52107c
doc: add removed rxn id to "rxnRetired" column
haowang-bioinfo Jan 8, 2024
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1 change: 1 addition & 0 deletions data/deprecatedIdentifiers/deprecatedReactions.tsv
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Expand Up @@ -282,3 +282,4 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx
"MAR03322" "" "" "RE3627X" "" "" "HMR_3322" "MNXR124610" "HMR_3322" "RCR14521" "" 0 "" "" "HMR_3322"
"MAR03296" "" "" "RE3627M" "" "R-HSA-109343" "HMR_3296" "MNXR124610" "HMR_3296" "RCR12779" "" 0 "" "" "HMR_3296"
"MAR04005" "" "" "" "" "" "RE3627C" "" "" "" "" 0 "" "" "RE3627C"
"MAR00965" "" "FAOXC2252053m" "" "" "" "FAOXC2252053m" "MNXR99352" "" "" "" 0 "" "" "FAOXC2252053m"
26 changes: 1 addition & 25 deletions model/Human-GEM.yml
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Expand Up @@ -221984,30 +221984,6 @@
- subsystem:
- "Fatty acid oxidation"
- confidence_score: 0
- !!omap
- id: "MAR00965"
- name: "Beta Oxidation of Long Chain Fatty Acid"
- metabolites: !!omap
- MAM00093m: -1
- MAM00103m: 1
- MAM01261m: 1
- MAM01597m: -1
- MAM02039m: 1
- MAM02040m: -1
- MAM02041m: 1
- MAM02552m: -1
- MAM02553m: 1
- MAM02630m: -1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000117054 or ENSG00000122971"
- rxnNotes: ""
- rxnFrom: "Recon3D"
- eccodes: "4.2.1.74"
- references: ""
- subsystem:
- "Fatty acid oxidation"
- confidence_score: 0
- !!omap
- id: "MAR00968"
- name: "Beta Oxidation of Long Chain Fatty Acid"
Expand Down Expand Up @@ -222046,7 +222022,7 @@
- MAM02553m: 1
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000117054 or ENSG00000122971"
- gene_reaction_rule: "(ENSG00000115361 and ENSG00000167969 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029) or (ENSG00000115361 and ENSG00000198721 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029) or (ENSG00000177646 and ENSG00000167969 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029) or (ENSG00000177646 and ENSG00000198721 and ENSG00000104823 and ENSG00000104325 and ENSG00000084754 and ENSG00000138029)"
- rxnNotes: ""
- rxnFrom: "Recon3D"
- eccodes: "4.2.1.74"
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3 changes: 1 addition & 2 deletions model/reactions.tsv
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Expand Up @@ -8273,9 +8273,8 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx
"MAR00927" "" "FAOXC2051843x" "" "" "" "FAOXC2051843x" "MNXR99344" "" "" "" 0 "" "" "FAOXC2051843x"
"MAR00930" "" "FAOXC2242046m" "" "" "" "FAOXC2242046m" "MNXR99349" "" "" "" 0 "" "" "FAOXC2242046m"
"MAR00952" "" "FAOXC2242046x" "" "" "" "FAOXC2242046x" "MNXR99350" "" "" "" 0 "" "" "FAOXC2242046x"
"MAR00965" "" "FAOXC2252053m" "" "" "" "FAOXC2252053m" "MNXR99352" "" "" "" 0 "" "" "FAOXC2252053m"
"MAR00968" "" "FAOXC2252053x" "" "" "" "FAOXC2252053x" "MNXR99352" "" "" "" 0 "" "" "FAOXC2252053x"
"MAR00970" "" "FAOXC226205m" "" "" "" "FAOXC226205m" "MNXR99356" "" "" "" 0 "" "" "FAOXC226205m"
"MAR00970" "" "FAOXC226205m" "" "" "" "FAOXC226205m" "MNXR99356" "" "" "" 0 "" "" "FAOXC226205m;MAR00965"
"MAR00972" "" "FAOXC226205x" "" "" "" "FAOXC226205x" "MNXR99356" "" "" "" 0 "" "" "FAOXC226205x"
"MAR00974" "" "FAOXC240200x" "" "" "" "FAOXC240200x" "MNXR99359" "" "" "" 0 "" "" "FAOXC240200x"
"MAR00975" "" "FAOXC241181x" "" "" "" "FAOXC241181x" "MNXR99361" "" "" "" 0 "" "" "FAOXC241181x"
Expand Down