🔖 rhto-GEM v1.3.0

SysBioChalmers · Apr 19, 2020 · f03b752 · f03b752
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Showing 5 changed files with 13 additions and 5 deletions.
diff --git a/ModelFiles/mat/rhto.mat b/ModelFiles/mat/rhto.mat
diff --git a/ModelFiles/xlsx/rhto.xlsx b/ModelFiles/xlsx/rhto.xlsx
diff --git a/ModelFiles/xml/rhto.xml b/ModelFiles/xml/rhto.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" level="3" version="1" fbc:required="false" groups:required="false">
-  <model metaid="rhto" id="rhto" name="Rhodosporidium toruloides-GEM_v1.2.2" fbc:strict="true">
+  <model metaid="rhto" id="rhto" name="Rhodosporidium toruloides-GEM_v1.3.0" fbc:strict="true">
     <notes>
       <body xmlns="http://www.w3.org/1999/xhtml">
         <p>Rhodotorula toruloides - strain NP11</p>
@@ -24,10 +24,10 @@
             </rdf:Bag>
           </dcterms:creator>
           <dcterms:created rdf:parseType="Resource">
-            <dcterms:W3CDTF>2020-04-19T12:06:50Z</dcterms:W3CDTF>
+            <dcterms:W3CDTF>2020-04-19T12:49:39Z</dcterms:W3CDTF>
           </dcterms:created>
           <dcterms:modified rdf:parseType="Resource">
-            <dcterms:W3CDTF>2020-04-19T12:06:50Z</dcterms:W3CDTF>
+            <dcterms:W3CDTF>2020-04-19T12:49:39Z</dcterms:W3CDTF>
           </dcterms:modified>
           <bqbiol:is>
             <rdf:Bag>

diff --git a/history.md b/history.md
@@ -1,8 +1,16 @@
 # History
 
+### rhto v1.3.0:
+* Fix
+  * Remove incorrect isoenzymes by manual curation of grRules (PR #44)
+  * Remove duplicate transport reactions (PR #45)
+  * Correct EC codes of mitochondrial 3-ketoacyl-CoA thiolases (PR #45)
+* Documentation
+  * Update citation and model stats in README.md
+
 ### rhto v1.2.2:
 * Features
-  * Data and analysis complementary to Lopes _et al_. under review (PR #38).
+  * Data and analysis complementary to [Lopes _et al._, 2020, Appl Microbiol Biotechnol](https://doi.org/10.1007/s00253-020-10386-5).  (PR #38).
 * Documentation
   * Update citation of _rhto-GEM_ paper, now available from Biotechnology & Bioengineering (PR #39).
 

diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-1.2.2
+1.3.0