refactor: move requirements/ to code/requirements/

.github/workflows/memote-history.yml

@@ -18,7 +18,7 @@ jobs:
         python-version: '3.9.7'
 
     - name: Install memote
-      run: pip install -r requirements/ci-requirements.txt
+      run: pip install -r code/requirements/ci-requirements.txt
 
     - name: Setup variables
       id: setup

.github/workflows/memote-run.yml

@@ -16,7 +16,7 @@ jobs:
         python-version: '3.9.7'
 
     - name: Install memote
-      run: pip install -r requirements/ci-requirements.txt
+      run: pip install -r code/requirements/ci-requirements.txt
 
     - name: Convert model
       run: |

.github/workflows/memote_release.yml

@@ -26,7 +26,7 @@ jobs:
         python-version: '3.9.7'
 
     - name: Install memote
-      run: pip install -r requirements/requirements.txt
+      run: pip install -r code/requirements/requirements.txt
 
     - name: Memote run
       run: |

.github/workflows/yaml-validation.yml

@@ -35,5 +35,5 @@ jobs:
 
     - name: Import with cobrapy
       run: |
-        pip install -r requirements/ci-requirements.txt
+        pip install -r code/requirements/ci-requirements.txt
         python -c "import cobra ; cobra.io.load_yaml_model('model/yeast-GEM.yml')"

README.md

@@ -69,7 +69,7 @@ Please see the installation instructions for each software package.
 
   If you want to use any of the [provided](https://github.com/SysBioChalmers/yeast-GEM/tree/main/code) Python functions, you may create an environment with all requirements:
   ```bash
-  pip install -r requirements/requirements.txt  # installs all dependencies
+  pip install -r code/requirements/requirements.txt  # installs all dependencies
   touch .env                                    # creates a .env file for locating the root
   ```