Not sure why cmx and ccm are out of sync

[JohnHadish]

Just made these ccm and cmx, but I get this error when I go to extract:

warning: cmx and ccm are out of sync

[JohnHadish]

The bottom right corner of both files do not match up

[bentsherman]

@JohnHadish I can't think of any way that KINC would produce out-of-sync ccm/cmx files like this, I think it's more likely that a lower-level error occured with the OS or disk, or you were using an old version of KINC. Does the exact same problem happen if you rerun similarity? If you can reproduce the problem then I can probably trace it to something that went wrong in either similarity or corrpower.

[spficklin]

Issue resolved with recent PR.

[JohnHadish]

I just got another one of these errors, I thought there might still be old installs on my system, so I removed all old files and did a fresh install of both ACE (v3.2.0) and KINC (v3.4.2). I ran it again, and got the same error:

kinc run extract --emx "Intermediary_File.emx" --ccm "Intermediary_File.paf.ccm" --cmx "Intermediary_File.paf.cmx" --csm "test.paf.csm" --format "text" --output "test_output.txt" --mincorr 0 --maxcorr 1 --filter-pvalue "0" --filter-rsquare "0.0"
Invalid MIT-MAGIC-COOKIE-1 key1%	6s	9m54s
2%	12s	9m48s
3%	19s	10m14s
4%	25s	10m
5%	32s	10m8s
6%	38s	9m55s
7%	45s	9m57s
8%	51s	9m46s
9%	57s	9m36s
10%	1m4s	9m36s
11%	1m10s	9m26s
12%	1m17s	9m24s
13%	1m23s	9m15s
14%	1m30s	9m12s
15%	1m36s	9m4s
16%	1m43s	9m
17%	1m50s	8m57s
18%	1m56s	8m48s
19%	2m3s	8m44s
20%	2m9s	8m36s
21%	2m15s	8m27s
22%	2m22s	8m23s
23%	2m28s	8m15s
24%	2m34s	8m7s
25%	2m41s	8m3s
26%	2m47s	7m55s
27%	2m53s	7m47s
warning: cmx and csm are out of sync at cmx coordinate: "Mdg_02B008990" , "Mdg_02A006630"  ( 4307 , 4008 ) 
28%	2m59s	7m40s
29%	3m6s	7m35s