Code

Cvtmle#91

Code

Merged

olivierlabayle merged 151 commits intomainTARGENE/TMLE.jl:mainfrom cvtmleTARGENE/TMLE.jl:cvtmleCopy head branch name to clipboardDec 6, 2023

+4,729-5,410

Commits

Commits on Aug 1, 2023

• rename Parameter to Estimand

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  2d97b50

• rename parameter to estimand

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Commits on Aug 2, 2023

• rename target to outcome

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• add scm

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Commits on Aug 3, 2023

• add show methods to scm and se

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• update equation struct to be fitted later

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• add se,scm fit!

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• add fit estimands and reset scm

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Commits on Aug 4, 2023

• add another SCM constructor

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  79d3657

• updated default Y model in scm

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  8e1749f

• update utils

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• update utils

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• update cache

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• more updates

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  37e1486

• fix weighted fluctuation

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  af22035

• fix some tests

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  8dcfffa

• fix more tests

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• fix estimads tests

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Commits on Aug 6, 2023

• rename some files and add more tests

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• update more tests

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Commits on Aug 7, 2023

• tests working locally

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• add more estimand checks

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• more constructors

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• update export list

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• add upstream methods

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• add more generality for accepted graph

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• add more docstrings

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Commits on Aug 8, 2023

• rename some structs

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Commits on Aug 9, 2023

• add more docs

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  3da0049

• update docs

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• add some constructors for estimands

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• fix some names

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• more docs

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  12be74c

Commits on Aug 10, 2023

• fix some constructors ambiguity

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  f666975

• update docs

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• update examples

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• add extension

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Commits on Aug 11, 2023

• more updates

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  8a315e5

• update docs and tests

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  e4138e5

• up deps and fix examples

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Commits on Aug 13, 2023

• update evotree dep

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  5fa1be4

• remove extension for now

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• actually remove ext

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• more tests

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• up def of with_encoder

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Commits on Aug 14, 2023

• add data adaptive truncation

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• rename plateau to truncate

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Commits on Aug 16, 2023

• add dodgy workload for now

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Commits on Aug 20, 2023

• add fluctuation model

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• some renames

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  4b8a8b3

• restructure project

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  884bb9f

• more refactorization

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  cef6d72

• fix ate double robustness test

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  c0ae075

• fix double robustness iate

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  7e82c70

• add caching of covariate

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  0ada1dc

• cache training expected value

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  5596a08

• syntax adjustment

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  ccc7fba

• add Statistics to test deps

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  b982cdd

• add precompilation again

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  b518415

• add naive_plugin_estimate!

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  14487c7

• rename conditional mean to counterfactual mean

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Commits on Aug 30, 2023

• add conditional distributions

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Commits on Sep 1, 2023

• add more content

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Commits on Sep 5, 2023

• add work in progress

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Commits on Sep 6, 2023

• add more content

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• wip

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  d13962d

Commits on Sep 12, 2023

• add some tests

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Commits on Sep 23, 2023

• add more work

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  3c16d83

• fix estimands

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  efdb459

• clean testfile

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• more updates

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  deaad87

• update gradient

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• more updates

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  948e7b2

• fix dbl robust ate

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  9ce592d

• fix db robust iate

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  e57ff48

• fix non regression

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  8331876

• fix more stuff

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Commits on Sep 24, 2023

• on my way to fixed tests

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  2e99ee7

• fixed tests

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  d43e37b

• add dr test for cv tmle and cv ose

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  9afac05

• add type to method

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• add types to structs fields

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Commits on Sep 25, 2023

• clean some files

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  5cafe37

• towards inclusion of scm

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• add scm and identification

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  8a81c51

• add compat entries

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  26b84c9

• remove optimize ordering as the cache allows storage of multiple estimands now

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• only missing management to check

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  44ea3ab

Commits on Sep 26, 2023

• add estimand to TMLE/OSE estimates

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  414ce75

• add some tests for missing management

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Commits on Oct 25, 2023

• add some docstrings

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  35349f3

Commits on Oct 26, 2023

• update docs

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  3007230

Commits on Oct 30, 2023

• fix some more docs

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  02d42b7

• update docs

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  1b8d4a9

• try see if docs are built

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  2e1a798

Commits on Oct 31, 2023

• update docs

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  d2e775d

• fix project

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  a761ea7

• add show method for scm

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  2061cf6

• fix code

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  29cea3e

• fix code

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  6e50645

Commits on Nov 1, 2023

• add configurations back in

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  1677c91

Commits on Nov 6, 2023

• add configuration

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  b3170bc

• update MLJBase dep and fix warnings

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  78b94ec

• up AD dep

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  71820a6

• up MLJ docs deps

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  ce918dd

• add some docs

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  fac1bda

• update docs

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  5fa052a

Commits on Nov 7, 2023

• add brute force ordering of parameters

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  25acbfd

• add early stopping to brute force

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Commits on Nov 9, 2023

• add brute_force and groups ordering of parameters

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  df25bf3

• change subtitle

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  dd6cc3a

• add default models

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Commits on Nov 10, 2023

• add machine data caching option

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Commits on Nov 13, 2023

• add YAML extension

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  2a74417

• add YAML to extra section for bacwards compatibility

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  082ceb8

• limit config test to 1.9

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  587f9af

Commits on Nov 17, 2023

• add json serialization and std field to estimates

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  c44a993

• change some field names

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  0118f93

• add serialization of estimates

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  1236d15

• fix 1.0 tests

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  c1373cf

• drop nightly from CI

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  23d5393

• try explicitely close the file

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Commits on Nov 18, 2023

• try something else

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  61ba7e0

• fix bug in groups ordering

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  dc99bb3

Commits on Nov 19, 2023

• try add + to read

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Commits on Nov 20, 2023

• change read method's name

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Commits on Nov 21, 2023

• add FitFailedError

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  d02633e

• add estimand to FitFailed exception

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Commits on Nov 22, 2023

• enforce sorted tuples to make estimands equal

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  ed9f899

• add ComposedEstimand and associated estimator

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Commits on Nov 23, 2023

• remove exports of some functions

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  6ed3afa

• add serialization of composite struct

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  b49b6b4

• fix serialization test

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  47873b8

• change nuisance function counts function

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  e5b52da

Commits on Nov 24, 2023

• add ordering support for composed estimands

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Commits on Nov 27, 2023

• test emptyIC

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  3bc0c67

• remove bias from IC in OSE

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  018bc47

Commits on Nov 28, 2023

• add hotelling test

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  21349f5

• test n_counts for composed

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  897d8d4

• add emptyIC for composed estimate

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  245864a

• rename field std to cov

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  f301b91

• relax some methods constraints

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Commits on Nov 29, 2023

• add SJON serialization of ComposedEstimates

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  3bd7796

• fix 0 dim array returned sometimes and

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  62e16a7

Commits on Dec 1, 2023

• fix non working sorting on tuples

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  a67ab4d

Commits on Dec 4, 2023

• make config more flexible

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Commits on Dec 5, 2023

• reexport OneSampleHotellingT2Test

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  c2f143d

Commits on Dec 6, 2023

• add kwargs to read_json and yaml to fix windows pb

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  294f9fc

• remove TMLE prefix in code

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  ba6f969

• remove precompilation workload for now

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  b4083fb

• up deps and remove unfortunate R file

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  committed
  9c05e87