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Remove outSAMtype parameter #13

Merged
merged 1 commit into from
Jul 19, 2024
Merged

Remove outSAMtype parameter #13

merged 1 commit into from
Jul 19, 2024

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LKress
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@LKress LKress commented Jul 19, 2024

Sorting the output BAM by coordinate can lead to errors, when the input fastq files are derived from coordinate sorted bam files (alexdobin/STAR#289). Thus, suggesting to have the default unmapped and let the user decide.

@LKress LKress requested a review from priesgo July 19, 2024 09:58
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Makes sense. Also different sort operations could be customised with the --additional_args

@priesgo priesgo merged commit ccbdb3e into master Jul 19, 2024
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