QUS Spectral Inference Pipeline

This repository contains updated scan preprocessing and deep learning pipelines to train diagnostic inference models.

Getting started

To be able to save outputs from data-aggregation/demo.ipynb, make an Outputs directory in this repository before getting started.

Environment Setup

Run notebooks in the multi_instance conda environment produced with this command:

conda env create -f env.yml

TODO: add further instructionsf or getting env to work in notebooks