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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 340 46

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 102 13

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 68 4

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Jupyter Notebook 84 4

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 60 8

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 29 3

Repositories

Showing 10 of 66 repositories
  • celcomen Public
    Teichlab/celcomen’s past year of commit activity
    Jupyter Notebook 5 0 0 0 Updated Mar 9, 2025
  • snp2cell Public

    cell type specific, trait-associated gene regulation

    Teichlab/snp2cell’s past year of commit activity
    Python 20 BSD-3-Clause 0 0 0 Updated Mar 6, 2025
  • PanGIAtlas Public

    Integration of gut cell atlases

    Teichlab/PanGIAtlas’s past year of commit activity
    Jupyter Notebook 21 GPL-3.0 4 2 0 Updated Feb 13, 2025
  • cell2tcr Public

    Inference of TCR motifs

    Teichlab/cell2tcr’s past year of commit activity
    Jupyter Notebook 29 3 2 0 Updated Jan 29, 2025
  • limbcellatlas Public

    This repository contains codes used for the human fetal limb cell atlas.

    Teichlab/limbcellatlas’s past year of commit activity
    Jupyter Notebook 13 4 0 0 Updated Jan 28, 2025
  • celltypist_wiki Public

    Materials and scripts for building cell type encyclopedia table

    Teichlab/celltypist_wiki’s past year of commit activity
    Python 19 3 0 0 Updated Jan 9, 2025
  • drug2cell Public

    Gene group activity utility functions for Scanpy

    Teichlab/drug2cell’s past year of commit activity
    Jupyter Notebook 68 4 7 0 Updated Dec 21, 2024
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 340 MIT 46 31 0 Updated Dec 16, 2024
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Teichlab/bin2cell’s past year of commit activity
    Jupyter Notebook 84 MIT 4 8 0 Updated Dec 11, 2024
  • scg_lib_structs Public

    Collections of library structure and sequence of popular single cell genomic methods

    Teichlab/scg_lib_structs’s past year of commit activity
    HTML 452 96 2 0 Updated Dec 10, 2024
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