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Update busco to 5.7.0 (bioconda#46490)
* Update busco to 5.7.0 * Constrain biopython; add patch --------- Co-authored-by: Matthew Berkeley <42berkeley@cua.edu>
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,23 @@ | ||
--- a/src/busco/run_BUSCO.py | ||
+++ b/src/busco/run_BUSCO.py | ||
@@ -121,18 +121,12 @@ class BuscoMaster: | ||
logger.debug("File upload failed. Status code: {}".format(response.status)) | ||
|
||
def get_dist_info(self): | ||
- if ( # todo: fix | ||
- "conda" in __file__ | ||
- and os.environ("CONDA_DEFAULT_ENV") | ||
- and os.environ("CONDA_PREFIX") | ||
- ): | ||
- self.run_data["distribution"] = "conda" | ||
- elif os.path.exists("/.dockerenv"): | ||
+ if os.path.exists("/.dockerenv"): | ||
self.run_data["distribution"] = "docker" | ||
elif os.path.exists("/.singularity.d"): | ||
self.run_data["distribution"] = "singularity" | ||
else: | ||
- self.run_data["distribution"] = "manual" | ||
+ self.run_data["distribution"] = "conda" | ||
|
||
def get_download_url(self): | ||
if self.config.getboolean("busco_run", "offline"): |
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