UCL · KrisThielemans · Jan 5, 2024 · Apr 11, 2019 · Apr 11, 2019 · Apr 22, 2019
diff --git a/.github/workflows/GHA_increase_disk_space.sh b/.github/workflows/GHA_increase_disk_space.sh
@@ -0,0 +1,23 @@
+#!/bin/bash
+df -h
+# locations from the internet, e.g. https://github.com/easimon/maximize-build-space
+# saves about 2GB
+if [ -d /usr/share/dotnet ]; then
+    echo removing dotnet
+    sudo rm -rf /usr/share/dotnet
+fi
+# saves about 10 GB
+if [ -d "$AGENT_TOOLSDIRECTORY" ]; then
+    echo removing agent_tools
+    sudo rm -rf "$AGENT_TOOLSDIRECTORY"
+fi
+# saves about 10 GB
+if [ -d /usr/local/lib/android ]; then
+    echo removing android files
+    sudo rm -rf /usr/local/lib/android
+fi
+if [ -d /opt/ghc ]; then
+    echo removing android files
+    sudo rm -rf /opt/ghc
+fi
+df -h
diff --git a/.github/workflows/build-test.yml b/.github/workflows/build-test.yml
@@ -2,7 +2,9 @@ name: Build and ctest and recon_test_pack CI
 
 on:
   push:
-    branches: [ master ]
+    branches: 
+      - master
+      - tof_sino_UCL
     paths-ignore:
       - '.appveyor.yml'
       - '**/*.md'
@@ -11,7 +13,9 @@ on:
       - '**/*.tex'
 
   pull_request:
-    branches: [ master ]
+    branches:
+      - master
+      - tof_sino_UCL
     paths-ignore:
       - '.appveyor.yml'
       - '**/*.md'
@@ -114,6 +118,18 @@ jobs:
       with:
         submodules: recursive
 
+    - name: disk space
+      shell: bash
+      run: |
+          case ${{matrix.os}} in
+            (ubuntu* | macOS*)
+              sudo .github/workflows/GHA_increase_disk_space.sh
+              ;;
+            (windows*)
+              # no idea what to do here
+              ;;
+           esac
+
     - name: set_compiler_variables
       shell: bash
       run: |

diff --git a/.gitignore b/.gitignore
@@ -94,6 +94,6 @@ install/
 examples/ROOT_files/ROOT_STIR_consistency/Gate_macros/main_GATE_macro_test*.mac
 examples/ROOT_files/ROOT_STIR_consistency/pretest_output/root_data_test*.root
 examples/ROOT_files/ROOT_STIR_consistency/pretest_output/root_header_test*.hroot
-examples/ROOT_files/ROOT_STIR_consistency/pretest_output/root_header_test*_lor_pos.txt
+examples/ROOT_files/ROOT_STIR_consistency/*voxel_data_*.*
 examples/ROOT_files/ROOT_STIR_consistency/pretest_output/stir_image*.*
 
diff --git a/documentation/release_notes_TOF.htm b/documentation/release_notes_TOF.htm
@@ -0,0 +1,131 @@
+<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN">
+<html>
+  <head>
+    <title>Summary of changes in STIR release 6.0</title>
+  </head>
+
+  <body>
+    <h1>Summary of changes in STIR release 6.0</h1>
+
+<p>This version is 95% backwards compatible with STIR 4.0 for the user (see below).
+Developers might need to make code changes as 
+detailed below.
+</p>
+<h2>Overall summary</h2>
+<p>
+</p>
+
+
+<p>Of course, there is also the usual code-cleanup and 
+improvements to the documentation.
+</p>
+
+<p>This release contains mainly code written by Kris Thielemans (UCL)  and Richard Brown (UCL).
+</p>
+
+    <h2>Patch release info</h2>
+    <ul>
+      <li> 5.0.0 released ?/?/2020</li>
+      <!--
+      <li> 4.0.1 released 28/04/2020
+        <ul>
+          <li><a href=https://github.com/UCL/STIR/pull/513>PR 513</a>  (suppress warnings with clang)</li>
+          </ul>
+          -->
+    </ul>
+
+<h2> Summary for end users (also to be read by developers)</h2>
+
+<h3>Changes breaking backwards compatibility from a user-perspective</h3>
+<ul>
+  <li> </li>
+  <ul>
+
+
+<h3>Bug fixes</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+<h3>New functionality</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+
+<h3>Changed functionality</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+
+<h3>Build system</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+
+<h3>Known problems</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+<h3>Minor bug fixes</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+<h3>Documentation changes</h3>
+<ul>
+<li>Added documentation on new features</li> 
+<li>Also check the wiki in addition to the provided PDFs.
+</li>
+ </ul>
+
+<h3>recon_test_pack changes</h3>
+<ul>
+<li>updated version number and added some clarification to the README.txt</li>
+ </ul>
+
+<h3>Other changes to tests</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+<H2>What's new for developers (aside from what should be obvious
+from the above):</H2>
+
+<h3>Major bugs fixed</h3>
+<ul>
+<li>see above</li>
+</ul>
+
+<h3>Backward incompatibities</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+<h3>New functionality</h3>
+<ul>
+  <li><code>Bin</code> can now be output to stream as text</li>
+  <li>added <code>RunTests::check_if_equal</code> for <code>Bin</code></li>
+</ul>
+
+
+<h3>Other code changes</h3>
+<ul>
+<li>
+</li>
+</ul>
+
+</body>
+
+</html>
diff --git a/examples/PET_simulation/generate_input_data.sh b/examples/PET_simulation/generate_input_data.sh
@@ -42,6 +42,7 @@ cat > my_input.txt <<EOF
 Discovery STE
 
 1
+0
 n
 
 0