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Fix proposal function cross reference syntax in vignette
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matt-graham committed Dec 11, 2024
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8 changes: 4 additions & 4 deletions vignettes/barker-proposal.Rmd
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Expand Up @@ -48,11 +48,11 @@ target_distribution <- list(

`rmcmc` provides implementations of several different proposal distributions which can be used within a Metropolis--Hastings based MCMC method:

- [barker_proposal()]: The robust gradient-based Barker proposal proposed by @livingstone2022barker.
- [langevin_proposal()]: A gradient-based proposal based on a discretization of Langevin dynamics.
- [hamiltonian_proposal()]: A gradient-based proposal based on a discretization of Hamiltonian dynamics, simulated for a fixed number of integrator steps.
- `barker_proposal()`: The robust gradient-based Barker proposal proposed by @livingstone2022barker.
- `langevin_proposal()`: A gradient-based proposal based on a discretization of Langevin dynamics.
- `hamiltonian_proposal()`: A gradient-based proposal based on a discretization of Hamiltonian dynamics, simulated for a fixed number of integrator steps.
With a single integrator step equivalent to `langevin_proposal`.
- [random_walk_proposal()]: A Gaussian random-walk proposal.
- `random_walk_proposal()`: A Gaussian random-walk proposal.

Each function takes optional arguments which can be used to customize the behaviour of the proposal such as the scalar `scale` of the proposal, a vector or matrix defining the proposal `shape` and routines to sample the auxiliary variables used in the proposal.

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