Tumor Paralleization research Git

SETUP INSTRUCTIONS

0. Clone repository (RECURSIVELY!)
   git clone git@github.com:UF-Cancer-Engineering-Lab/TumorParallelization.git --recursive
cd ./TumorParallelization

1. Create virutal environment python -m venv .venv

2. Activate virtual environment
   Windows: .\.venv\Scripts\activate.bat
   Mac/Linux: source ./.venv/bin/activate

3. Install Requirements pip install -r requirements.txt

4. Install NVIDIA's CUDA TOOLKIT

5. Build Cuda Kernels
   compile_cuda_kernels.bat (Windows)
   chmod +x compile_cuda_kernels.sh && ./compile_cuda_kernels.sh (Linux)

6. Go to config/config.json and change parameters as desired

7. Run program.py

Running Tests

Run tests.py python tests.py

Making executable

• Run make_executable.bat (windows) or make_executable.sh (linux)
• Copy contents of dist folder wherever desired and run program
• To change configuration modify dist/config/config.json
• To add scene modify dist/scenes/scene_name.json

Making changes to CUDA Code

• Go to cuda_kernels folder
• Go to src
• Make changes as desired
• Run compile_cuda_kernels.bat or compile_cuda_kernels.sh
• Run program.py