Merge pull request #77 from UMCUGenetics/release/v3.8.0

Release/v3.8.0
UMCUGenetics · Jun 10, 2024 · 5dee544 · 5dee544
2 parents bb922b8 + be3040d
commit 5dee544
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Showing 12 changed files with 1,154 additions and 950 deletions.
diff --git a/ExonCov.py b/ExonCov.py
diff --git a/ExonCov/__init__.py b/ExonCov/__init__.py
@@ -8,13 +8,15 @@
 import flask_admin
 from flask_security import Security, SQLAlchemyUserDatastore
 from flask_debugtoolbar import DebugToolbarExtension
+from flask_migrate import Migrate
 
 from ExonCov.utils import url_for_other_page, event_logger
 
 # Setup APP
 app = Flask(__name__)
 app.config.from_object('config')
 db = SQLAlchemy(app)
+migrate = Migrate(app, db, command='db_migrate')
 csrf = CSRFProtect(app)
 admin = flask_admin.Admin(app, name='ExonCov Admin', template_mode='bootstrap3')
 
@@ -27,7 +29,10 @@
 app.jinja_env.globals['git_version'] = check_output(git_command + ['describe', '--tags']).decode('ascii').strip()
 app.jinja_env.globals['git_commit'] = check_output(git_command + ['rev-parse', 'HEAD']).decode('ascii').strip()
 
-from . import views, api_views, admin_views, models, forms
+from . import views, api_views, admin_views, models, forms, cli
+
+# Setup CLI
+app.cli.add_command(cli.db_cli)
 
 # Setup flask_security
 user_datastore = SQLAlchemyUserDatastore(db, models.User, models.Role)