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VEVOS Simulation v2.0.0 #19

Merged
merged 37 commits into from
Nov 8, 2023
Merged

VEVOS Simulation v2.0.0 #19

merged 37 commits into from
Nov 8, 2023

Commits on Mar 16, 2023

  1. logging: minor adjustments to log messages

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Mar 16, 2023
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  2. logging: exchanged custom logger with tinylog

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Mar 16, 2023
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Commits on Mar 17, 2023

  1. logging: minor change in log level

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Mar 17, 2023
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  2. logging: minor change in log level

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Mar 17, 2023
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Commits on May 4, 2023

  1. feat: add loading of presence conditions before and after a change

    @AlexanderSchultheiss
    AlexanderSchultheiss committed May 4, 2023
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  2. gitignore: ignore eclipse-related project files

    @AlexanderSchultheiss
    AlexanderSchultheiss committed May 4, 2023
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Commits on May 5, 2023

  1. fix: parents without a ground truth are correctly handled

    @AlexanderSchultheiss
    AlexanderSchultheiss committed May 5, 2023
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Commits on Aug 29, 2023

  1. Add logging

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  2. logging: minor adjustments to log messages

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  3. logging: exchanged custom logger with tinylog

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  4. logging: minor change in log level

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  5. logging: minor change in log level

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  6. Add logging

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  7. Merge remote-tracking branch 'origin/gt-loading' into gt-loading

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  8. Merge branch 'ground-truth-loading' into gt-loading

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  9. Update version

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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  10. remove duplicate dependency

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Aug 29, 2023
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Commits on Sep 1, 2023

  1. feat: improve robustness when loading ground truth

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Sep 1, 2023
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Commits on Sep 6, 2023

  1. feat: add additional logging

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Sep 6, 2023
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Commits on Oct 18, 2023

  1. fix: correctly initialize path to fallback PCs

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Oct 18, 2023
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Commits on Oct 19, 2023

  1. feat: implement loading of code matching from ground truth

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Oct 19, 2023
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Commits on Nov 2, 2023

  1. feat: implement loading of ground truth without data because there we… 

    …re no analyzed changes
    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 2, 2023
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  2. tests: update test PCs

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 2, 2023
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Commits on Nov 6, 2023

  1. tests: add test files for checking new GT processing

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 6, 2023
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  2. tests: implement tests for variant generation using the new ground truth

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 6, 2023
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  3. fix(tests): correct feature names

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 6, 2023
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  4. feat: update ground truth loading to new format

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 6, 2023
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  5. fix(tests): update test cases

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 6, 2023
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  6. tests: update test files in preparation for new GT format

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 6, 2023
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Commits on Nov 7, 2023

  1. feat: revise ground truth loading and variant generation for new grou… 

    …nd truth format
    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 7, 2023
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  2. Merge remote-tracking branch 'origin/gt-loading' into gt-loading 

    # Conflicts:
#	src/main/java/org/variantsync/vevos/simulation/io/kernelhaven/ArtefactCSVExporter.java
#	src/test/java/org/variantsync/vevos/simulation/VariantGenerationTest.java
    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 7, 2023
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Commits on Nov 8, 2023

  1. feat: update simplification and document deprecation

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 8, 2023
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  2. fix: remove duplicate generation of annotations

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 8, 2023
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  3. misc: update version in pom

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 8, 2023
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  4. docs: update README

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 8, 2023
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  5. misc: add license

    @AlexanderSchultheiss
    AlexanderSchultheiss committed Nov 8, 2023
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  6. Merge pull request #18 from VariantSync/gt-loading 

    VEVOS Simulation v2.0.0
    @AlexanderSchultheiss
    AlexanderSchultheiss authored Nov 8, 2023
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