No Bibliography

[jannesklee]

If I use the theme my whole Bibliography vanishes. The references are fine and linking to the empty Bibliography. If I remove header, footer, extra_stylesheet and extra_files the Bibliography is available.
Doxygen-version: 1.8.11

[fredRos]

Same problem here with doxygen 1.8.8. The bibliography in pdf via latex is fine and also worked fine before I used this bootstrap theme.
Here is some output from doxygen that may help but I couldn't figure out how to pinpoint the problem, I looked into customdoxygen.css but saw nothing related to bibliography.

...
Generating docs for page citelist...
citelist:12: warning: Unexpected new line character
citelist:13: warning: Unexpected new line character
citelist:24: warning: Unexpected new line character
citelist:39: warning: Unexpected new line character
citelist:51: warning: Unexpected new line character
citelist:53: warning: Unexpected new line character
citelist:54: warning: Unexpected new line character
citelist:63: warning: Unexpected new line character
citelist:64: warning: Unexpected new line character
citelist:65: warning: Unexpected new line character
citelist:66: warning: Unexpected new line character
citelist:67: warning: Unexpected new line character
citelist:80: warning: Unexpected new line character
citelist:81: warning: Unexpected new line character
citelist:82: warning: Unexpected new line character
citelist:83: warning: Unexpected new line character
Generating group documentation...
...

A similar problem is that certain sections like @see ... are also missing from html but displayed correctly in pdf

[fredRos]

I have very little experience with css and basically no clue of
javascript but looking into the source code of citelist.html, all
the entries are there. They are simply not rendered. Usually a browser
would apply default markup to an unknown class, so I thought I should
peek into doxyboot.js. I saw that it replaces a lot of elements to
give it the bootstrap look. The non-rendering is caused by
removing the description list <dl> which includes citelist,
todo, and others. The offending line is

$('.contents > .textblock > dl').remove();

After commenting it out, I get back the bibliography, todo, see also... sections. Perhaps the rendering it not as it should be with bootstrap but it at least it is rendered and it looks ok to me.

I found this workaround, the clean but tedious way would be to expand doxy-boot.js and rewrite classes for all these doxygen sections, and in particular to fix this code https://github.com/Velron/doxygen-bootstrapped/blob/master/doxy-boot.js#L225 that doesn't render todos but removes all such sections mapped to <div class="textblock"><dl class="todo">

  /* todo list */
  var todoelements = $('.contents > .textblock > dl.reflist > dt, .contents > .textblock > dl.reflist > dd');
  for (var i = 0; i < todoelements.length; i += 2) {
    $('.contents > .textblock').append(
      '<div class="panel panel-default active">'
        + "<div class=\"panel-heading todoname\">" + $(todoelements[i]).html() + "</div>"
        + "<div class=\"panel-body\">" + $(todoelements[i+1]).html() + "</div>"
      + '</div>');
  }
  $('.contents > .textblock > dl').remove();