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ViennaRNA

Software and Documents from the Theoretical Biochemistry Institute, University of Vienna

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  1. ViennaRNA ViennaRNA Public

    The ViennaRNA Package

    C 311 78

  2. forna forna Public

    Create force-directed graphs of RNA secondary structures.

    JavaScript 100 31

  3. forgi forgi Public

    An RNA manipulation library.

    Python 53 31

  4. RNAcode RNAcode Public

    RNAcode - Detecting protein coding genes in multiple sequence alignment

    C 24 8

  5. RNAsketch RNAsketch Public

    Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.

    Python 18 3

  6. fornac fornac Public

    A container for the forna visualization software.

    JavaScript 17 14

Repositories

Showing 10 of 38 repositories
  • negseeddesign Public
    ViennaRNA/negseeddesign’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 28, 2024
  • ViennaRNA Public

    The ViennaRNA Package

    ViennaRNA/ViennaRNA’s past year of commit activity
    C 311 78 38 3 Updated Oct 20, 2024
  • VIECPLX Public
    ViennaRNA/VIECPLX’s past year of commit activity
    C++ 0 0 0 0 Updated Oct 4, 2024
  • RNAcode Public

    RNAcode - Detecting protein coding genes in multiple sequence alignment

    ViennaRNA/RNAcode’s past year of commit activity
    C 24 GPL-3.0 8 6 1 Updated Aug 22, 2024
  • RNAblueprint Public

    RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints

    ViennaRNA/RNAblueprint’s past year of commit activity
    C++ 9 GPL-3.0 3 1 0 Updated Jul 29, 2024
  • fornac Public

    A container for the forna visualization software.

    ViennaRNA/fornac’s past year of commit activity
    JavaScript 17 Apache-2.0 14 14 1 Updated May 30, 2024
  • RRIdesign Public
    ViennaRNA/RRIdesign’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Mar 27, 2024
  • forgi Public

    An RNA manipulation library.

    ViennaRNA/forgi’s past year of commit activity
    Python 53 GPL-3.0 31 12 0 Updated Feb 16, 2024
  • ernwin Public

    Sample and predict coarse grain 3D RNA structures

    ViennaRNA/ernwin’s past year of commit activity
    Python 8 AGPL-3.0 5 3 0 Updated Feb 12, 2024
  • drtransformer Public Forked from bad-ants-fleet/drtransformer

    Heuristic cotranscriptional folding using the nearest neighbor energy model.

    ViennaRNA/drtransformer’s past year of commit activity
    Python 5 MIT 5 1 0 Updated Sep 11, 2023

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