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ChangeLog.md

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Changelog

Revision history for barriers

1.8.1 2019-11-21 Gregor Entzian, Ronny Lorenz rna@tbi.univie.ac.at

  • Fix connected component option
  • Update connected component description
  • Fix various mixed usages of signed/unsigned types
  • Replace hash table implementation with one that uses separate chaining with linked lists instead of simple linear probing
  • Refrain from installing get_hashbits.pl since this is only required at compile-time
  • Refactor installation process of Perl 5 scripts and Perl 5 module

1.8.0 2019-10-18 Gregor Entzian, Ronny Lorenz rna@tbi.univie.ac.at

  • Fix command line argument parsing
  • Fix potentially running into infinite loops
  • Change data type for minima indices to unsigned long
  • Fix connected component output and help message
  • Add command line parameters to specify rate file names
  • Abort if number of input lines exceeds 2/3 of hash size
  • Re-integrate command line parameter to specify mapped structure output
  • Fix several memory leaks
  • Always print graph and move set options to STDERR unless --quiet option is provided
  • Use Markdown files for ChangeLog and README
  • Add alternative RNA2 graph and move set implementation by Felix Kuehnl

1.7.0 2017-11-26 Michael T. Wolfinger mtw@tbi.univie.ac.at

  • Disable Shift moves by default
  • Added noLP-rate functionality
  • Added ligand binding functionality
  • Added /scripts/crossrates.pl for post-processing ligand data
  • Allow up to 34 HASHBITS in conigure.ac (default 27)

0.01 2001-03-08 Ivo L. Hofacker, Christoph Flamm, Peter F. Stadler ivo@tbi.univie.ac.at

  • barriers: initial version.