add queries for transcriptomics #329
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name: Jupyter Notebook checks | |
on: [push, release] | |
jobs: | |
notebooks: | |
name: "Build the notebooks for the docs" | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.9 | |
- name: Install dependencies | |
run: | | |
python -m pip install -U pip | |
python -m pip install -r .github/workflows/requirements.txt | |
- name: Execute the notebooks | |
run: | | |
jupyter nbconvert --to notebook --execute --ExecutePreprocessor.timeout=600 docs/source/tutorials/*.ipynb | |
- uses: actions/upload-artifact@v2 | |
with: | |
name: notebooks-for-${{ github.sha }} | |
path: docs/tutorials | |