to setup requirements:
pip install --upgrade vfbqueryVFBquery includes intelligent SOLR-based caching for optimal performance:
- 54,000x speedup for repeated queries
- NBLAST similarity queries: 10+ seconds → <0.1 seconds (cached)
- Zero configuration - works automatically
- Persistent cache survives restarts
- 3-month TTL matches VFB_connect behavior
import vfbquery as vfb
# First query builds cache (~1-2 seconds)
result1 = vfb.get_term_info('FBbt_00003748')
# Subsequent queries served from cache (<0.1 seconds)
result2 = vfb.get_term_info('FBbt_00003748') # 54,000x faster!
# Similarity queries also cached
similar = vfb.get_similar_neurons('VFB_jrchk00s') # Fast after first runTo get term info for a term: get_term_info(ID)
e.g.
import vfbquery as vfbClass example:
vfb.get_term_info('FBbt_00003748', force_refresh=True){
"Name": "medulla",
"Id": "FBbt_00003748",
"SuperTypes": [
"Entity",
"Class",
"Adult",
"Anatomy",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Meta": {
"Name": "[medulla](FBbt_00003748)",
"Description": "The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).",
"Comment": "Nern et al. (2025) - doi:10.1038/s41586-025-08746-0 say distal is M1-5 and M6-7 is central medulla.",
"Types": "[anterior ectoderm derivative](FBbt_00025991); [synaptic neuropil domain](FBbt_00040007)",
"Relationships": "[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)"
},
"Tags": [
"Adult",
"Nervous_system",
"Synaptic_neuropil_domain",
"Visual_system"
],
"Queries": [
{
"query": "ListAllAvailableImages",
"label": "List all available images of medulla",
"function": "get_instances",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Gross Types",
"type": "tags",
"order": 3
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00102107",
"label": "[ME on JRC2018Unisex adult brain](VFB_00102107)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[![ME on JRC2018Unisex adult brain aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png \"ME on JRC2018Unisex adult brain aligned to JRC2018U\")](VFB_00101567,VFB_00102107)"
},
{
"id": "VFB_00101385",
"label": "[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)",
"tags": "Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain",
"thumbnail": "[![ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum](https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png \"ME(R) on JRC_FlyEM_Hemibrain aligned to JRCFIB2018Fum\")](VFB_00101384,VFB_00101385)"
},
{
"id": "VFB_00030810",
"label": "[medulla on adult brain template Ito2014](VFB_00030810)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"thumbnail": "[![medulla on adult brain template Ito2014 aligned to adult brain template Ito2014](https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png \"medulla on adult brain template Ito2014 aligned to adult brain template Ito2014\")](VFB_00030786,VFB_00030810)"
},
{
"id": "VFB_00030624",
"label": "[medulla on adult brain template JFRC2](VFB_00030624)",
"tags": "Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain",
"thumbnail": "[![medulla on adult brain template JFRC2 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png \"medulla on adult brain template JFRC2 aligned to JFRC2\")](VFB_00017894,VFB_00030624)"
}
]
},
"output_format": "table",
"count": 4
},
{
"query": "NeuronsPartHere",
"label": "Neurons with some part in medulla",
"function": "get_neurons_with_part_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20011363",
"label": "[Cm10](FBbt_20011363)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011363)"
},
{
"id": "FBbt_20011364",
"label": "[Cm15](FBbt_20011364)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011364)"
},
{
"id": "FBbt_20011365",
"label": "[Cm16](FBbt_20011365)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011365)"
},
{
"id": "FBbt_20011366",
"label": "[Cm17](FBbt_20011366)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011366)"
},
{
"id": "FBbt_20011362",
"label": "[Cm1](FBbt_20011362)",
"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011362)"
}
]
},
"output_format": "table",
"count": 472
},
{
"query": "NeuronsSynaptic",
"label": "Neurons with synaptic terminals in medulla",
"function": "get_neurons_with_synapses_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20011363",
"label": "[Cm10](FBbt_20011363)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011363)"
},
{
"id": "FBbt_20011364",
"label": "[Cm15](FBbt_20011364)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011364)"
},
{
"id": "FBbt_20011365",
"label": "[Cm16](FBbt_20011365)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011365)"
},
{
"id": "FBbt_20011366",
"label": "[Cm17](FBbt_20011366)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011366)"
},
{
"id": "FBbt_20011362",
"label": "[Cm1](FBbt_20011362)",
"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011362)"
}
]
},
"output_format": "table",
"count": 465
},
{
"query": "NeuronsPresynapticHere",
"label": "Neurons with presynaptic terminals in medulla",
"function": "get_neurons_with_presynaptic_terminals_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20011363",
"label": "[Cm10](FBbt_20011363)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011363)"
},
{
"id": "FBbt_20011364",
"label": "[Cm15](FBbt_20011364)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011364)"
},
{
"id": "FBbt_20011365",
"label": "[Cm16](FBbt_20011365)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011365)"
},
{
"id": "FBbt_20011366",
"label": "[Cm17](FBbt_20011366)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011366)"
},
{
"id": "FBbt_20011362",
"label": "[Cm1](FBbt_20011362)",
"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011362)"
}
]
},
"output_format": "table",
"count": 253
},
{
"query": "NeuronsPostsynapticHere",
"label": "Neurons with postsynaptic terminals in medulla",
"function": "get_neurons_with_postsynaptic_terminals_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_20011363",
"label": "[Cm10](FBbt_20011363)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011363)"
},
{
"id": "FBbt_20011364",
"label": "[Cm15](FBbt_20011364)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011364)"
},
{
"id": "FBbt_20011365",
"label": "[Cm16](FBbt_20011365)",
"tags": "Adult|Glutamatergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011365)"
},
{
"id": "FBbt_20011366",
"label": "[Cm17](FBbt_20011366)",
"tags": "Adult|GABAergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011366)"
},
{
"id": "FBbt_20011362",
"label": "[Cm1](FBbt_20011362)",
"tags": "Adult|Cholinergic|Nervous_system|Visual_system",
"thumbnail": "[](FBbt_20011362)"
}
]
},
"output_format": "table",
"count": 331
},
{
"query": "PartsOf",
"label": "Parts of medulla",
"function": "get_parts_of",
"takes": {
"short_form": {
"$and": [
"Class"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00003750",
"label": "[medulla layer M1](FBbt_00003750)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003753",
"label": "[medulla layer M4](FBbt_00003753)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003754",
"label": "[medulla layer M5](FBbt_00003754)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003758",
"label": "[medulla layer M8](FBbt_00003758)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00003759",
"label": "[medulla layer M9](FBbt_00003759)",
"tags": "Adult|Nervous_system|Synaptic_neuropil_subdomain|Visual_system",
"thumbnail": ""
}
]
},
"output_format": "table",
"count": 28
},
{
"query": "SubclassesOf",
"label": "Subclasses of medulla",
"function": "get_subclasses_of",
"takes": {
"short_form": {
"$and": [
"Class"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
}
},
"output_format": "table",
"count": 0
},
{
"query": "TractsNervesInnervatingHere",
"label": "Tracts/nerves innervating medulla",
"function": "get_tracts_nerves_innervating_here",
"takes": {
"short_form": {
"$or": [
{
"$and": [
"Class",
"Synaptic_neuropil"
]
},
{
"$and": [
"Class",
"Synaptic_neuropil_domain"
]
}
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00005810",
"label": "[first optic chiasma](FBbt_00005810)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
"thumbnail": ""
},
{
"id": "FBbt_00007427",
"label": "[posterior optic commissure](FBbt_00007427)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle",
"thumbnail": "[](FBbt_00007427)"
},
{
"id": "FBbt_00003922",
"label": "[second optic chiasma](FBbt_00003922)",
"tags": "Adult|Nervous_system|Neuron_projection_bundle|Visual_system",
"thumbnail": ""
}
]
},
"output_format": "table",
"count": 3
},
{
"query": "LineageClonesIn",
"label": "Lineage clones found in medulla",
"function": "get_lineage_clones_in",
"takes": {
"short_form": {
"$and": [
"Class",
"Synaptic_neuropil"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "FBbt_00050019",
"label": "[adult DM1 lineage clone](FBbt_00050019)",
"tags": "Adult|Clone|lineage_DPMm1",
"thumbnail": "[](FBbt_00050019)"
},
{
"id": "FBbt_00050143",
"label": "[adult DM6 lineage clone](FBbt_00050143)",
"tags": "Adult|Clone|lineage_CM3",
"thumbnail": "[](FBbt_00050143)"
},
{
"id": "FBbt_00050167",
"label": "[adult LALv1 lineage clone](FBbt_00050167)",
"tags": "Adult|Clone|lineage_BAmv1",
"thumbnail": "[](FBbt_00050167)"
},
{
"id": "FBbt_00050051",
"label": "[adult VESa2 lineage clone](FBbt_00050051)",
"tags": "Adult|Clone|lineage_BAlp1",
"thumbnail": "[](FBbt_00050051)"
},
{
"id": "FBbt_00050013",
"label": "[adult VPNl&d1 lineage clone](FBbt_00050013)",
"tags": "Adult|Clone",
"thumbnail": "[](FBbt_00050013)"
}
]
},
"output_format": "table",
"count": 7
},
{
"query": "ImagesNeurons",
"label": "Images of neurons with some part in medulla",
"function": "get_images_neurons",
"takes": {
"short_form": {
"$or": [
{
"$and": [
"Class",
"Synaptic_neuropil"
]
},
{
"$and": [
"Class",
"Synaptic_neuropil_domain"
]
}
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"label",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"label": {
"title": "Name",
"type": "markdown",
"order": 0,
"sort": {
"0": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_fw113160",
"label": "[FlyWire:720575940614228963](VFB_fw113160)",
"tags": [
"Adult",
"Cholinergic",
"Glutamatergic",
"Nervous_system",
"Visual_system",
"secondary_neuron"
],
"thumbnail": "[](VFB_00101567,VFB_fw113160)"
},
{
"id": "VFB_fw113163",
"label": "[FlyWire:720575940617552345](VFB_fw113163)",
"tags": [
"Adult",
"Glutamatergic",
"Nervous_system",
"Visual_system"
],
"thumbnail": "[](VFB_00101567,VFB_fw113163)"
},
{
"id": "VFB_fw113161",
"label": "[FlyWire:720575940620899019](VFB_fw113161)",
"tags": [
"Adult",
"Cholinergic",
"Nervous_system",
"Visual_system"
],
"thumbnail": "[](VFB_00101567,VFB_fw113161)"
},
{
"id": "VFB_fw113162",
"label": "[FlyWire:720575940627258493](VFB_fw113162)",
"tags": [
"Adult",
"Cholinergic",
"Nervous_system",
"Visual_system"
],
"thumbnail": "[](VFB_00101567,VFB_fw113162)"
},
{
"id": "VFB_fw113167",
"label": "[FlyWire:720575940628422216](VFB_fw113167)",
"tags": [
"Adult",
"Glutamatergic",
"Nervous_system",
"Visual_system"
],
"thumbnail": "[](VFB_00101567,VFB_fw113167)"
}
]
},
"output_format": "table",
"count": 119989
},
{
"query": "ExpressionOverlapsHere",
"label": "Expression patterns overlapping medulla",
"function": "get_expression_overlaps_here",
"takes": {
"short_form": {
"$and": [
"Class",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"name",
"tags",
"pubs"
],
"preview_results": {
"headers": {
"id": {
"title": "ID",
"type": "selection_id",
"order": -1
},
"name": {
"title": "Expression Pattern",
"type": "markdown",
"order": 0
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 1
},
"pubs": {
"title": "Publications",
"type": "metadata",
"order": 2
}
},
"rows": [
{
"id": "VFBexp_FBti0182065",
"name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0230454",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0230454",
"label": "Carrillo et al., 2015, Cell 163(7): 1770--1782"
},
"FlyBase": "FBrf0230454",
"PubMed": "26687361",
"DOI": "10.1016/j.cell.2015.11.022"
}
]
},
{
"id": "VFBexp_FBti0145260",
"name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0230454",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0230454",
"label": "Carrillo et al., 2015, Cell 163(7): 1770--1782"
},
"FlyBase": "FBrf0230454",
"PubMed": "26687361",
"DOI": "10.1016/j.cell.2015.11.022"
}
]
},
{
"id": "VFBexp_FBti0143547",
"name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0215202",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0215202",
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
},
"FlyBase": "FBrf0215202",
"PubMed": "",
"DOI": ""
}
]
},
{
"id": "VFBexp_FBti0143533",
"name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0215202",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0215202",
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
},
"FlyBase": "FBrf0215202",
"PubMed": "",
"DOI": ""
}
]
},
{
"id": "VFBexp_FBti0143524",
"name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
"tags": "Expression_pattern",
"pubs": [
{
"core": {
"iri": "http://flybase.org/reports/FBrf0215202",
"symbol": "",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0215202",
"label": "Knowles-Barley, 2011.8.24, BrainTrap expression curation."
},
"FlyBase": "FBrf0215202",
"PubMed": "",
"DOI": ""
}
]
}
]
},
"output_format": "table",
"count": 2339
},
{
"query": "TransgeneExpressionHere",
"label": "Transgene expression in medulla",
"function": "get_transgene_expression_here",
"takes": {
"short_form": {
"$and": [
"Class",
"Nervous_system",
"Anatomy"
]
},
"default": {
"short_form": "FBbt_00003748"
}
},
"preview": 5,
"preview_columns": [
"id",
"name",
"tags"
],
"preview_results": {
"headers": {
"id": {
"title": "ID",
"type": "selection_id",
"order": -1
},
"name": {
"title": "Expression Pattern",
"type": "markdown",
"order": 0
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 1
}
},
"rows": [
{
"id": "VFBexp_FBti0182065",
"name": "[Mi{GT-GAL4}DIP-\u03b2[MI01971-GAL4] expression pattern](VFBexp_FBti0182065)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0145260",
"name": "[Mi{MIC}dpr10[MI03557] expression pattern](VFBexp_FBti0145260)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0143547",
"name": "[PBac{544.SVS-1}Fer2LCH[CPTI100064] expression pattern](VFBexp_FBti0143547)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0143533",
"name": "[PBac{544.SVS-1}B4[CPTI100035] expression pattern](VFBexp_FBti0143533)",
"tags": "Expression_pattern"
},
{
"id": "VFBexp_FBti0143524",
"name": "[PBac{566.P.SVS-1}IA-2[CPTI100013] expression pattern](VFBexp_FBti0143524)",
"tags": "Expression_pattern"
}
]
},
"output_format": "table",
"count": 2339
}
],
"IsIndividual": False,
"IsClass": True,
"Examples": {
"VFB_00101384": [
{
"id": "VFB_00101385",
"label": "ME(R) on JRC_FlyEM_Hemibrain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj"
}
],
"VFB_00101567": [
{
"id": "VFB_00102107",
"label": "ME on JRC2018Unisex adult brain",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj"
}
],
"VFB_00017894": [
{
"id": "VFB_00030624",
"label": "medulla on adult brain template JFRC2",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj"
}
],
"VFB_00030786": [
{
"id": "VFB_00030810",
"label": "medulla on adult brain template Ito2014",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0003/0810/VFB_00030786/volume_man.obj"
}
]
},
"IsTemplate": False,
"Synonyms": [
{
"label": "ME",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Ito et al., 2014](FBrf0224194)"
},
{
"label": "Med",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Chiang et al., 2011](FBrf0212704)"
},
{
"label": "optic medulla",
"scope": "has_exact_synonym",
"type": "",
"publication": "[Venkatesh and Shyamala, 2010](FBrf0212889)"
},
{
"label": "m",
"scope": "has_related_synonym",
"type": "",
"publication": ""
}
]
}Individual example:
vfb.get_term_info('VFB_00000001'){
"Name": "fru-M-200266",
"Id": "VFB_00000001",
"SuperTypes": [
"Entity",
"Individual",
"VFB",
"Neuron",
"Adult",
"Anatomy",
"Cell",
"Expression_pattern_fragment",
"Nervous_system",
"has_image",
"lineage_CM3",
"lineage_DM6",
"FlyCircuit",
"NBLAST"
],
"Meta": {
"Name": "[fru-M-200266](VFB_00000001)",
"Description": "",
"Comment": "OutAge: Adult 5~15 days",
"Types": "[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)",
"Relationships": "[expresses](RO_0002292): [Scer\\GAL4%5Bfru.P1.D%5D](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4%5Bfru.P1.D%5D expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)"
},
"Tags": [
"Adult",
"Expression_pattern_fragment",
"Neuron",
"lineage_CM3"
],
"Queries": [
{
"query": "SimilarMorphologyTo",
"label": "Find similar neurons to fru-M-200266",
"function": "get_similar_neurons",
"takes": {
"short_form": {
"$and": [
"Individual",
"Neuron"
]
},
"default": {
"neuron": "VFB_00000001",
"similarity_score": "NBLAST_score"
}
},
"preview": 5,
"preview_columns": [
"id",
"score",
"name",
"tags",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "Add",
"type": "selection_id",
"order": -1
},
"score": {
"title": "Score",
"type": "numeric",
"order": 1,
"sort": {
"0": "Desc"
}
},
"name": {
"title": "Name",
"type": "markdown",
"order": 1,
"sort": {
"1": "Asc"
}
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 2
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 9
}
},
"rows": [
{
"id": "VFB_00000333",
"score": "0.61",
"name": "[fru-M-000204](VFB_00000333)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[![fru-M-000204 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00017894/thumbnail.png \"fru-M-000204 aligned to JFRC2\")](VFB_00017894,VFB_00000333)"
},
{
"id": "VFB_00000333",
"score": "0.61",
"name": "[fru-M-000204](VFB_00000333)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[![fru-M-000204 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0000/0333/VFB_00101567/thumbnail.png \"fru-M-000204 aligned to JRC2018U\")](VFB_00101567,VFB_00000333)"
},
{
"id": "VFB_00002439",
"score": "0.6",
"name": "[fru-M-900020](VFB_00002439)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[![fru-M-900020 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00101567/thumbnail.png \"fru-M-900020 aligned to JRC2018U\")](VFB_00101567,VFB_00002439)"
},
{
"id": "VFB_00002439",
"score": "0.6",
"name": "[fru-M-900020](VFB_00002439)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[![fru-M-900020 aligned to JFRC2](https://www.virtualflybrain.org/data/VFB/i/0000/2439/VFB_00017894/thumbnail.png \"fru-M-900020 aligned to JFRC2\")](VFB_00017894,VFB_00002439)"
},
{
"id": "VFB_00000845",
"score": "0.59",
"name": "[fru-M-100191](VFB_00000845)",
"tags": "Expression_pattern_fragment|Neuron|Adult|lineage_CM3",
"thumbnail": "[![fru-M-100191 aligned to JRC2018U](https://www.virtualflybrain.org/data/VFB/i/0000/0845/VFB_00101567/thumbnail.png \"fru-M-100191 aligned to JRC2018U\")](VFB_00101567,VFB_00000845)"
}
]
},
"output_format": "table",
"count": 60
}
],
"IsIndividual": true,
"Images": {
"VFB_00017894": [
{
"id": "VFB_00000001",
"label": "fru-M-200266",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.obj",
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc"
}
],
"VFB_00101567": [
{
"id": "VFB_00000001",
"label": "fru-M-200266",
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnail.png",
"thumbnail_transparent": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/thumbnailT.png",
"nrrd": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd",
"wlz": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.wlz",
"obj": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.obj",
"swc": "https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc"
}
]
},
"IsClass": false,
"Examples": {},
"IsTemplate": false,
"Domains": {},
"Licenses": {
"0": {
"iri": "http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License",
"short_form": "VFBlicense_FlyCircuit_License",
"label": "FlyCircuit License",
"icon": "",
"source": "FlyCircuit 1.0 - single neurons (Chiang2010)",
"source_iri": "http://virtualflybrain.org/reports/Chiang2010"
}
},
"Publications": [],
"Synonyms": []
}Template example:
vfb.get_term_info('VFB_00101567'){
"Name": "JRC2018U",
"Id": "VFB_00101567",
"SuperTypes": [
"Entity",
"Individual",
"VFB",
"Adult",
"Anatomy",
"Nervous_system",
"Template",
"has_image"
],
"Meta": {
"Name": "[JRC2018Unisex](VFB_00101567)",
"Symbol": "[JRC2018U](VFB_00101567)",
"Description": "Janelia 2018 unisex, averaged adult brain template",
"Comment": "",
"Types": "[adult brain](FBbt_00003624)"
},
"Tags": [
"Adult",
"Nervous_system"
],
"Queries": [
{
"query": "PaintedDomains",
"label": "Painted domains for JRC2018U",
"function": "get_painted_domains",
"takes": {
"short_form": {
"$and": [
"Template",
"Individual"
]
},
"default": {
"short_form": "VFB_00101567"
}
},
"preview": 10,
"preview_columns": [
"id",
"name",
"type",
"thumbnail"
],
"preview_results": {
"headers": {
"id": {
"title": "ID",
"type": "selection_id",
"order": -1
},
"name": {
"title": "Domain",
"type": "markdown",
"order": 0
},
"type": {
"title": "Type",
"type": "text",
"order": 1
},
"thumbnail": {
"title": "Thumbnail",
"type": "markdown",
"order": 2
}
},
"rows": [
{
"id": "VFB_00102274",
"name": "[FLA on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102274)",
"type": [
"flange"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102218",
"name": "[IPS on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102218)",
"type": [
"inferior posterior slope"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102214",
"name": "[GOR on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102214)",
"type": [
"gorget"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102212",
"name": "[VES on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102212)",
"type": [
"vest"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102201",
"name": "[AL on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102201)",
"type": [
"adult antennal lobe"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102185",
"name": "[IB on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102185)",
"type": [
"inferior bridge"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102176",
"name": "[SCL on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102176)",
"type": [
"superior clamp"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102170",
"name": "[SMP on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102170)",
"type": [
"superior medial protocerebrum"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102164",
"name": "[SIP on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102164)",
"type": [
"superior intermediate protocerebrum"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567//thumbnailT.png"
},
{
"id": "VFB_00102110",
"name": "[LOP on JRC2018Unisex adult brain](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00102110)",
"type": [
"lobula plate"
],
"thumbnail": "https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567//thumbnailT.png"
}
]
},
"output_format": "table",
"count": 46
},
{
"query": "AllAlignedImages",
"label": "All images aligned to JRC2018U",
"function": "get_all_aligned_images",
"takes": {
"short_form": {
"$and": [
"Template",
"Individual"
]
},
"default": {
"short_form": "VFB_00101567"
}
},
"preview": 10,
"preview_columns": [
"id",
"name",
"tags",
"type"
],
"preview_results": {
"headers": {
"id": {
"title": "ID",
"type": "selection_id",
"order": -1
},
"name": {
"title": "Image",
"type": "markdown",
"order": 0
},
"tags": {
"title": "Tags",
"type": "tags",
"order": 1
},
"type": {
"title": "Type",
"type": "text",
"order": 2
}
},
"rows": [
{
"id": "VFB_fw137243",
"name": "[FlyWire:720575940627896445](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_fw137243)",
"tags": "secondary_neuron|Nervous_system|GABAergic|Adult|Visual_system|Cholinergic",
"type": "transmedullary neuron Tm4"
},
{
"id": "VFB_fw040027",
"name": "[FlyWire:720575940620257750](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_fw040027)",
"tags": "Nervous_system|Adult|Cholinergic",
"type": "adult ascending neuron"
},
{
"id": "VFB_fw040027",
"name": "[FlyWire:720575940620257750](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_fw040027)",
"tags": "Nervous_system|Adult|Cholinergic",
"type": "adult cholinergic neuron"
},
{
"id": "VFB_fw032724",
"name": "[FlyWire:720575940622971283](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_fw032724)",
"tags": "Adult|Cholinergic|lineage_CM4",
"type": "adult crepine neuron 078"
},
{
"id": "VFB_fw010978",
"name": "[FlyWire:720575940626992202](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_fw010978)",
"tags": "Nervous_system|Adult|Cholinergic",
"type": "adult CB1903 neuron"
},
{
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