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Update README.md
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jonperdomo authored Jan 31, 2025
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# ContextSV

<p>
<img src="https://github.com/user-attachments/assets/b6dca03c-11f8-4882-852f-d06c23bebebb" alt="ContextSV" align="left" style="width:100px;"/>
<img src="https://github.com/user-attachments/assets/03603ad1-df9d-438d-911c-81af0cf612e3" alt="ContextSV" align="left" style="width:100px;"/>
A long-read, whole-genome structural variant (SV) caller. It takes as input long read alignments (BAM), the
corresponding reference genome (FASTA), a VCF with high-quality SNPs
(e.g. via GATK, Deepvariant, <a href="https://github.com/WGLab/NanoCaller">NanoCaller</a>, and <a href="https://gnomad.broadinstitute.org/downloads">gnomAD</a> database
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