Fix conda build (#50)

* Remove zlib dependency
WGLab · May 9, 2024 · 3fe913b · 3fe913b
1 parent 1a6a6c7
commit 3fe913b
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Showing 8 changed files with 226 additions and 410 deletions.
diff --git a/.gitignore b/.gitignore
@@ -8,6 +8,7 @@ __pycache__
 # SWIG generated files
 lib/*.so
 lib/lrst.py
+lib/.nfs*
 src/lrst_wrap.cpp
 
 # Build and dist
@@ -27,4 +28,4 @@ SampleData
 *.log
 
 # Testing scripts
-linktoscripts
+linktoscripts
diff --git a/conda/meta.yaml b/conda/meta.yaml
@@ -1,13 +1,13 @@
 {% set version = "1.3.1" %}
-{% set sha256 = "eb4c7677d43d80d19ddbac11900ae3a14efd6f2a3c4cc8bbc08e063a81e0e1df" %}
+{% set revision = "725c239b6c1f4d6daf5788871cd47f8781358e3d" %}
 
 package:
   name: longreadsum
   version: {{ version }}
 
 source:
-  url: https://github.com/WGLab/LongReadSum/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: '{{ sha256 }}'
+  git_url: https://github.com/WGLab/LongReadSum.git
+  git_rev: {{ revision }}
 
 build:
   number: 0

diff --git a/include/kseq.h b/include/kseq.h
diff --git a/include/output_data.h b/include/output_data.h
@@ -61,6 +61,7 @@ class Basic_Seq_Statistics
     void global_sum_no_gc();
     void calculate_NXX_scores();  // Calculate N50, N95, N05, etc.
     void resize();
+    void addBases(int count);
 
     Basic_Seq_Statistics();
     Basic_Seq_Statistics(const Basic_Seq_Statistics &_bss);