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12 changes: 12 additions & 0 deletions docs/Install.md
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Expand Up @@ -29,6 +29,18 @@
+ gridExtra
+ scales


You can run the commands below line by line to manually set up the conda environment and install the required packages:
```
conda create -n py27nanomod python=2.7.14
conda activate py27nanomod
conda install -c conda-forge readline=6.2
conda install -c bioconda samtools==1.9 bwa==0.7.17
conda install -c r rpy2==2.7.0 r-ggplot2==2.1.0 r-gridExtra==2.0.0 r-scales==0.3.0
conda install -c anaconda h5py==2.7.1 hdf5==1.10.1 scipy==1.2.1 numpy==1.15.4
conda install -c biobuilds r-cowplot==0.9.1
```

## Test:
To run `NanoMod`, users need to `source activate py27nanomod` and then go to the NanoMod folder.

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