MentaLiST-0.2.1

Compatibility

• MentaLiST is now compatible with julia-0.6

Bugfixes

• Fixed logging of loci with zero votes.
• Fixed bug in calling code when multiple alleles are present
• Fixed bug in kmer weights

Performance

• Use faster library (FastaIO) for Fasta reading
• Enabled parallel processing in build_db
• Optimizations in de bruijn graph code
• Improved novel allele detection

MentaLiST-0.2.0

• New calling algorithm (Note: MentaLiST-v0.1.x databases are not compatible with MentaLiST-v0.2.x)
• Detects and reconstructs putative novel alleles, also calling non-present loci, allowing the use for wgMLST schemes.
• Cache of cgMLST and pubMLST schema lists are now stored in a ~/.mentalist directory (#10)

MentaLiST-0.1.3

• Fix bug that was preventing download of M. tuberculosis data from cgMLST (#4)
• Databases are compressed by default
• Standardized formatting of list_cgmlst and list_pubmlst commands
• MentaLiST.jl executable file renamed to mentalist for easier typing
• Fixed bug in the voting output, (allele idx instead of real allele number was being written)

MentaLiST-0.1.2

v0.1.2

updated basic usage

MentaLiST-0.1.1

v0.1.1

sorted ties output

MentaLiST-0.1.0

v0.1.0

Mergin the changes to create and use a profile for finding ST in a ML…

MentaLiST-0.0.0

Initial release.