MentaLiST-0.2.5

Features

• Updated Julia to 1.0

MentaLiST-0.2.4

Bugfixes

• Fix Enterobase Downloads

Features

• Updated Output Format

MentaLiST-0.1.9

Bugfixes

• Fix Enterobase downloads (#64)

Features

• New Galaxy tool for constructing Neighbor-Joining Tree from MentaLiST results (#66)

MentaLiST-0.2.3

Bugfixes

• Use full organism name in Galaxy Tool Data Table
• Use HTTPS for cgmlst.org scheme downloads
• Fixed enterobase download URL (#64)

Features

• New command db_info extracts details from a MentaLiST database.

MentaLiST-0.1.8

Bugfixes

• Variable naming bug (#49)
• Download from Enterobase over HTTPS (#54)

Galaxy Tools

• Use full names for organisms in Galaxy Tool Data Table for Enterobase database downloads (#59)

Features

Galaxy Tools

• New MentaLiST Distance Matrix Tool (#53)

MentaLiST-0.1.7

Bugfixes

• Fixed output for loci that have no kmer in the sample

MentaLiST-0.1.6

Bugfixes

• Handle MLST schemes that include IUPAC ambiguous bases

MentaLiST-0.1.5

Bugfixes

• Use unzip to decompress new cgMLST scheme format

MentaLiST-0.2.2

Fork an unzip process to decompress downloaded cgMLST alleles (#30)

* Fork an unzip process to decompress downloaded cgMLST alleles

* Rewrite download_cgmlst_scheme() to handle new zip scheme files from cgmlst.org

* Tidy up comments and fix total locus count

* Fix test data filenames for L. pneumophila

* Add unzip as a conda dependency

* variable n_locus not used

MentaLiST-0.1.4

Features

• Download Enterobase schemes