Fixed a wildcard search so it looks only for files. If it finds folde…

…rs imcp crashes.
Washington-University · Jul 25, 2023 · 0e220bc · 0e220bc
1 parent 17686f3
commit 0e220bc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/fMRIVolume/GenericfMRIVolumeProcessingPipeline.sh b/fMRIVolume/GenericfMRIVolumeProcessingPipeline.sh
@@ -847,7 +847,7 @@ fi
 if [ "$fMRIReference" != "NONE" ]; then
     # --- copy over existing scout images
     log_Msg "Copying Scout from Reference fMRI"
-    ${FSLDIR}/bin/imcp ${fMRIReferencePath}/Scout* ${fMRIFolder}
+    find ${fMRIReferencePath} -maxdepth 1 -name "Scout*" -type f -exec ${FSLDIR}/bin/imcp {} ${fMRIFolder} \;
 
     for simage in SBRef_nonlin SBRef_nonlin_norm
     do