Update conf2hires

bbregister should not need initialization, since T2w is already initialized with FS BBR in PreFreeSurferPipeline
Washington-University · Jun 13, 2023 · a16297f · a16297f
1 parent 3026acc
commit a16297f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/FreeSurfer/custom/conf2hires b/FreeSurfer/custom/conf2hires
@@ -318,7 +318,7 @@ if($#MMode) then
     set DontCopy = `diff $MMreg $MMregAuto | grep -v \# | grep -v filename | wc -l`
     if($DontCopy) set OKtoCopy = 0;
   endif
-  set cmd = (bbregister --s $subject --mov $MM --lta $MMregAuto --init-coreg \
+  set cmd = (bbregister --s $subject --mov $MM --lta $MMregAuto --init-header \
     --$MMBBRcon --surf $srcsurf --proj-abs 1.5 --threads $threads)
   echo "\n#===============================" | tee -a $LF
   echo $cmd | tee -a $LF