Code

PostFreeSurfer related pull request#135

Code

Merged

glasserm merged 23 commits intoWashington-University:masterWashington-University/HCPpipelines:masterfrom mindbrainlab:qunex_postfsmindbrainlab/HCPpipelines:qunex_postfsCopy head branch name to clipboardOct 12, 2019

+677-495

Commits

Commits on Sep 27, 2019

• FreeSurfer2CaretConvertAndRegisterNonlinear.sh related changes

  Show description for cc5ab4a
  sivcek

  committed
  cc5ab4a

• `FreeSurfer2CaretConvertAndRegisterNonlinear_1res.sh related changes

  Show description for 4119999
  sivcek

  committed
  4119999

• PostFreeSurferPipeline_1res.sh

  Show description for 598cbc2
  sivcek

  committed
  598cbc2

• PostFreeSurferPipeline.sh related changes

  Show description for 4fc5c23
  sivcek

  committed
  4fc5c23

Commits on Oct 2, 2019

• Adjusted MPP compliance checking.

  sivcek

  committed
  5a56f68

• Added verbose_echo.

  sivcek

  committed
  92716a2

Commits on Oct 3, 2019

• Avoided skipping CreateMyelinMaps.sh and added checks for what can not be run w/o T2w image.

  sivcek

  committed
  f85aac0

Commits on Oct 7, 2019

• Corrected variable reporting.

  sivcek

  committed
  503868d

• Simplified T2w conditional execution and added it to adding CIFTI Maps to Spec Files.

  sivcek

  committed
  077793d

Commits on Oct 8, 2019

• Moved -mpp-mode parameter reading and reporting.

  sivcek

  committed
  53a9b87

• Simplified T2w related checks code placement.

  sivcek

  committed
  40fb987

• Changed parameter reading and defaults setting position.

  sivcek

  committed
  14d154b

• Split conceptually # Create T1w/T2w maps using if/fi statements.

  sivcek

  committed
  274b2a4

• Simplified code.

  sivcek

  committed
  39498c8

Commits on Oct 9, 2019

• Implemented new naming convention and added warring when using FS for registration.

  sivcek

  committed
  58e0d72

Commits on Oct 10, 2019

• Changed environment var reporting and fixed log_Warn.

  sivcek

  committed
  ee14852

• Simplified lists in CreateMyelin maps further.

  sivcek

  committed
  adb0706

Commits on Oct 11, 2019

• Fixed STRINGList and reporting with spaces.

  sivcek

  committed
  33165d4

• Changed the warning.

  sivcek

  committed
  b8e66cd

Commits on Oct 12, 2019

• Changed default from FS to MSMSulc

  sivcek

  committed
  634ecbd

• In both scripts.

  sivcek

  committed
  845fd46

• Using variable to report script started / finished in verbose_echo.

  sivcek

  committed
  9785189

• In both scripts.

  sivcek

  committed
  d2e9c8a