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TaskfMRI Consolidation and Back out of FreeSurfer v6 requirement
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@tbbrown tbbrown released this 27 Apr 16:54
· 1390 commits to master since this release
v3.26.0
af5e198

This release includes:

  1. Changes associated with #65 - Task fMRI analysis consolidation

    • Change Task fMRI Analysis pipeline to run with FSL version 5.0.7 or greater
    • No longer works with FSL version 5.0.6
    • Simplify file names since FSL version 5.0.6 is no longer supported
    • Remove files that are no longer needed since no longer supporting v5.0.6 and earlier

  2. Back out changes introduced in v3.25.0 that were FreeSurfer v6 specific.

    • The version of FreeSurferPipeline.sh included in this release is the same as the one that was in v3.24.0.
    • It does not require FreeSurfer v6 and does not use the special version of the recon-all script.

  3. Change to using "Pos" and "Neg" in file names for specification of phase encoding directions in Diffusion Preprocessing code instead of using RL and LR or PA and AP.

  4. More consistently use EchoSpacing as a variable name instead of DwellTime in Functional Preprocessing code.

  5. Changes associated with #66 - Don't include b0 files in merging of final data

  6. Changes associated with #67 - Additions to consolidated TaskfMRILevel{1,2}.sh scripts

  7. Some improved comments

NOTE

This release contains a version of PostFreeSurfer/scripts/FreeSurfer2CaretConvertAndRegisterNonLinear.sh that uses an option on the Connectome Workbench command line tool (wb_command) that will be supported in Connectome Workbench v1.3.0. Using this release for Structural Preprocessing prior to the release of Connectome Workbench v1.3.0, will require the use of a development release of Connectome Workbench subsequent to v1.2.3.

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