Main new features:
- Addition of transmit field bias pipeline for correction of T1w/T2w myelin maps (#298)
- Addition of option to the ICAFIX pipeline to use python-based FIX (‘pyfix’), which is now the default for new set-ups. The legacy Matlab/R-based FIX will continue to be used by default for existing set-ups (see
--enable-legacy-fixparameter for details). (#312) - Addition of Longitudinal Structural pipelines (FreeSurfer and PostFreeSurfer) for processing of multiple timepoints for the same subject (#295). Additional longitudinal pipelines are under development (e.g., for applying to the fMRI data).
- Addition of option to the ICAFIX pipeline to find the melodic ICA consensus decomposition using the ‘icasso’ algorithm and use it in a final ‘melodic’ run (#312)
- Addition of Gaussian mixture modeling to ‘RSNRegression’ to compute more valid z-stats (#310)
- Added Optional Wishart Filtering Capability after last temporal regression to all ‘RSNRegression’ modes to improve reproducibility of effect size maps
Other changes:
- Updated FSL binary location for FSL 6.0.6 and later to PATH (#299)
- Recompiled all MATLAB to MCR2022b
- Miscellaneous improvements and bugfixes.
Note that we have bumped the version from 4.x to 5.x based on the addition of major new functionality, but 5.0.0 should be backwards compatible with the 4.x tree.
Full list of changes from 4.8.0-->5.0.0 here.