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Wedge lab

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  1. battenberg battenberg Public

    Battenberg R package for subclonal copynumber estimation

    R 80 48

  2. dpclust dpclust Public

    Dirichlet Process based methods for subclonal reconstruction of tumours

    R 29 16

  3. dpclust3p dpclust3p Public

    Dirichlet Process Clustering Pre-Processing Pipeline

    R 9 10

  4. AmplificationTimeR AmplificationTimeR Public

    Code for timing amplifications

    R 3 1

  5. InUtero_MPN InUtero_MPN Public archive

    Code accompanying 'In utero origin of myelofibrosis presenting in adult monozygotic twins' (Sousos, Ní Leathlobhair, et al., Nature Medicine, 2022). See https://www.nature.com/articles/s41591-022-0…

    R 1

  6. dpclust_smchet_docker dpclust_smchet_docker Public

    DPClust subclonal architecture calling Docker pipeline for SMC-het

    R 2

Repositories

Showing 8 of 8 repositories
  • battenberg Public

    Battenberg R package for subclonal copynumber estimation

    Wedge-lab/battenberg’s past year of commit activity
    R 80 AGPL-3.0 48 9 1 Updated Oct 14, 2024
  • dpclust Public

    Dirichlet Process based methods for subclonal reconstruction of tumours

    Wedge-lab/dpclust’s past year of commit activity
    R 29 AGPL-3.0 16 11 1 Updated Oct 4, 2024
  • AmplificationTimeR Public

    Code for timing amplifications

    Wedge-lab/AmplificationTimeR’s past year of commit activity
    R 3 GPL-3.0 1 2 0 Updated Jun 6, 2024
  • AmplificationTimeR_paper_archive Public archive

    A repository to store any code that was run as part of the AmplificationTimeR publication.

    Wedge-lab/AmplificationTimeR_paper_archive’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Apr 25, 2024
  • dpclust3p Public

    Dirichlet Process Clustering Pre-Processing Pipeline

    Wedge-lab/dpclust3p’s past year of commit activity
    R 9 AGPL-3.0 10 7 0 Updated Jul 14, 2023
  • PhaDPClust Public

    PhaDPClust

    Wedge-lab/PhaDPClust’s past year of commit activity
    R 0 0 0 0 Updated Nov 27, 2022
  • InUtero_MPN Public archive

    Code accompanying 'In utero origin of myelofibrosis presenting in adult monozygotic twins' (Sousos, Ní Leathlobhair, et al., Nature Medicine, 2022). See https://www.nature.com/articles/s41591-022-01793-4

    Wedge-lab/InUtero_MPN’s past year of commit activity
    R 1 0 0 0 Updated Aug 1, 2022
  • dpclust_smchet_docker Public

    DPClust subclonal architecture calling Docker pipeline for SMC-het

    Wedge-lab/dpclust_smchet_docker’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Jul 4, 2017

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