Exclude import sorting in ruff

As of now, `ruff` does not allow custom sorting and ordering of imports.
See astral-sh/ruff#2419.

.pre-commit-config.yaml

@@ -14,6 +14,10 @@ repos:
  rev: 1.13.0
  hooks:
  - id: blacken-docs
+ - repo: https://github.com/PyCQA/isort
+ rev: 5.12.0
+ hooks:
+ - id: isort
  - repo: https://github.com/pre-commit/mirrors-prettier
  rev: v3.0.0-alpha.4
  hooks:

pyproject.toml

@@ -27,7 +27,8 @@ use_parentheses = true
 known_num = "networkx,numpy,pandas,scipy,sklearn,statmodels"
 known_plot = "matplotlib,mpl_toolkits,seaborn"
 known_bio = "anndata"
-sections = "FUTURE,STDLIB,THIRDPARTY,NUM,PLOT,BIO,FIRSTPARTY,LOCALFOLDER"
+known_r = "rpy2"
+sections = "FUTURE,STDLIB,THIRDPARTY,NUM,PLOT,R,BIO,FIRSTPARTY,LOCALFOLDER"
 no_lines_before = "LOCALFOLDER"
 balanced_wrapping = true
 length_sort = "0"
@@ -43,7 +44,6 @@ select = [
  "F", # Errors detected by Pyflakes
  "E", # Error detected by Pycodestyle
  "W", # Warning detected by Pycodestyle
- "I", # isort
  "D", # pydocstyle
  "B", # flake8-bugbear
  "TID", # flake8-tidy-imports
@@ -89,10 +89,9 @@ ignore = [
 ]
 
 [tool.ruff.per-file-ignores]
-"docs/*" = ["I", "BLE001"]
+"docs/*" = ["BLE001"]
 "tests/*" = ["D"]
 "*/__init__.py" = ["F401"]
-"scvelo/__init__.py" = ["I"]
 
 [tool.jupytext]
 formats = "ipynb,md"