Publication release

Pattern matching for aggregating replicates into betabinomial testing been improved to prevent inappropriate comparisons.

More information on reproducible installation of software has been added.

Documentation has been expanded and improved.

Original release

First implementation of transcriptomic window tiling, repetitive element identification, CLIP-seq preprocessing, read counting, enrichment testing, reproducibility measures, transcript and feature type summaries, GO term analysis, and t-SNE visualization.