GitHub - Yoshi8765/Tellurium-intro: Intro to Tellurium for Veronica

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
Alan's Code		Alan's Code
.gitattributes		.gitattributes
.gitignore		.gitignore
ClassDemo_Solution.py		ClassDemo_Solution.py
In class tutorial.pdf		In class tutorial.pdf
Learning Tellurium.pdf		Learning Tellurium.pdf
Lecture 5 - Adaptation in bacterial chemotaxis.pdf		Lecture 5 - Adaptation in bacterial chemotaxis.pdf
Phase plot behavior predictor.py		Phase plot behavior predictor.py
ReadMe.txt		ReadMe.txt
TellRoadCheatSheet.pdf		TellRoadCheatSheet.pdf
chemotaxis-model1.py		chemotaxis-model1.py
chemotaxis-model2.py		chemotaxis-model2.py
data.csv.npy		data.csv.npy
hw6 336.pptx		hw6 336.pptx
hw6.py		hw6.py
hwproblem.py		hwproblem.py
intro.py		intro.py
intro_sol.py		intro_sol.py

Repository files navigation

Proposed order
1. Igem modelling intro with example code [intro.py (do models 1-3, don't do libstructural)]

2. Learning Tellurium exercises (Learning Tellurium.pdf)

3. Replicate Central Dogma [intro.py (replicate central dogma problem with a parameter sweep of a_m and a_p)

4a. Structural analysis using MCA (libstructural in intro.py)

4b. Phase Analysis [hw6.py]

5. Create Chemotaxis models [??]