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HiCtool (v2.1)
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@rcalandrelli rcalandrelli released this 20 May 17:08
· 28 commits to master since this release
v2.1
15d0654
  • HiCtool is now based only on unix commands. A Python script is given which contains utility functions for I/O of files generated with HiCtool in the Python console.
  • The entire pre-processing is now performed with a single-command.
  • Possibility of processing Hi-C data generated with a cocktail of restriction enzymes (i.e. as in the Arima Kit) or with restriction enzymes including "N" in their sequence.
  • HiCtool includes now additional species besides hg38 and mm10: hg19, mm9, dm6, susScr3, susScr11.
  • New function to visualize heatmaps from different samples or conditions on a side-by-side view for comparison.
  • Small bug fixes.
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