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Protein Design Labs

🤩 Welcome to our curated list of computational protein design research labs!

This list serves as a public reference for labs engaged in computational protein design research. While we've made every effort to be comprehensive, our knowledge may be limited (mostly limited to labs in the US and China).

We apologize if we've missed your lab or labs you're familiar with. Suggestions for additions are highly welcomed – please feel free to open new issues.

📝 Note: The list was based on @Zuricho's post on Zhihu in Chinese. The current version has been expanded and formatted with the assistance of @Leo-T-Zang.

Table of Contents

#North America

🇺🇸 United States

MIT

Bonnie Berger
Tommi S. Jaakkola
Regina Barzilay
Tess E. Smidt
Sergey Ovchinnikov
Alexandre Rives
Amy E. Keating
James J. Collins

Harvard University

Debora Marks & Chris Sander
Nicholas F. Polizzi
Marinka Zitnik
George Church
Yilun Du
Omar Abudayyeh & Jonathan Gootenberg

Stanford University

Possu Huang
Jure Leskovec
Rhiju Das
Brian Trippe
Brian Hie
Ron Dror
James Zou

University of Washington

David Baker
Neil King
  • Lab website: King Lab | Research
  • Research focus: Protein nanomaterial design for medicine, self-assembling protein nanomaterial design
Gaurav Bhardwaj
  • Lab website: Bhardwaj Lab
  • Research focus: Peptide design for therapeutics
Frank Dimaio

UCSF

William DeGrado
Tanja Kortemme

UC Berkeley

Jennifer Doudna
Yun S. Song
Jennifer Listgarten
Pieter Abbeel

UCLA

Quanquan Gu
Lin Jiang

Caltech

Frances Arnold
Steve Mayo
Yisong Yue

University of Chicago

Rama Ranganathan
Andrew Ferguson

UIUC

Huimin Zhao
Ge Liu

Scripps Research Institute

William E. Balch
Marco Mravic

Princeton University

Mengdi Wang
Ellen D. Zhong

Duke University

Bruce Donald
Pranam D. Chatterjee
Alexander Tong
Philip A. Romero
Rohit Singh
David C. Richardson & Jane Shelby Richardson

John Hopkins University

Jeffrey J. Gray

Carnegie Mellon University

Lei Li

Northwestern University

Gabriel J. Rocklin
Neha P. Kamat

UNC Chapel Hill

Brian Kuhlman
Tianlong Chen
Huaxiu Yao
Huong Kratochvil

St. Jude Children’s Research Hospital

Elizabeth H. Kellogg

Dartmouth College

Gevorg Grigoryan (Left for Company)

Columbia University

Mohammed AlQuraishi
Scott Banta
Anum Glasgow

New York University

Jin Kim Montclare
Kyunghyun Cho
Andrew Gordon Wilson

Northeastern University

Wengong Jin

Texas A&M University

Shuiwang Ji

UCSB

Yang Yang

UCSC

Andy Hsien-Wei Yeh

UT Southwestern

Qian Cong

University of Wisconsin-Madison

Anthony Gitter

University of Alabama at Birmingham

Hy Truong Son

University of Florida

Wenjun Xie

Georgia Institute of Technology

Yunan Luo

University of Delaware

Jason Gleghorn

Wake Forest University

Katherine I. Albanese

Vanderbilt University

Zhongyue Yang
Jens Meiler
Stephanie Wankowicz
Hassane Mchaourab
Ben Brown
AI for Protein Dynamics Center

🇨🇦 Canada

Mila - Quebec AI Institute

Yoshua Bengio
Jian Tang

University of Toronto

Philip M. Kim

#EMEA

🇬🇧 United Kingdom

University of Cambridge

Pietro Liò

University of Oxford

Michael Bronstein
Charlotte Deane
Yarin Gal

Imperial College London

Guang Yang

UCL

David T. Jones

University of Edinburgh

Chris Wells Wood
Lynne Regan

University of Bristol

Dek Woolfson
Ross Anderson

Cardiff University

Fabio Parmeggiani

University of Leeds

Darren Tomlinson
Takashi Ochi
Neil Ranson
Richard Bayliss
David Brockwell
Sheena Radford

🇮🇪 Ireland

University College Cork

Sabin Tabirca

🇨🇭 Switzerland

ETH Zurich

Donald Hilvert

EPFL

Bruno E. Correia
Anne-Florence Bitbol

🇩🇪 Germany

TUM

Rost Burkhard

FU Berlin

Frank Noé

Leipzig University

Clara T. Schoeder

University of Bayreuth

Birte Höcker

🇫🇷 France

Ecole Polytechnique

Thomas Simonson

INRAE MIAT

Thomas Schiex

Toulouse Biotechnology Institute

Sophie Barbe

🇪🇸 Spain

Centre for Genomic Regulation

Noelia Ferruz

IBMB CSIC

Enrique Marcos

IMDEA Nanoscience research institute

Sara H Mejias

Barcelona Supercomputing Center

Victor Guallar Tasies

Spanish National Research Council

Manuel Ferrer Martínez

Universitat Autònoma de Barcelona

Salvador Ventura Zamora

🇦🇹 Austria

TU Graz

Gustav Oberdorfer

🇧🇪 Belgium

Vrije Universiteit Brussel

Anastassia A. Vorobieva

🇸🇪 Sweden

Stockholm University

Patrick Bryant

🇩🇰 Denmark

University of Copenhagen

Kresten Lindorff-Larsen
Martin Willemoës

Aarhus University

Michael Westberg

🇮🇱 Israel

Weizmann Institute of Science

Sarel J Fleishman

Tel Aviv University

Jérôme Tubiana

🇸🇦 Saudi Arabia

KAUST

Xin Gao

Mohamed bin Zayed University of AI

Eric Xing

🇳🇱 Netherlands

Eindhoven University of Technology

Francesca Grisoni

#Asia

🇯🇵 Japan

Tokyo University

Kotaro Tsuboyama

🇸🇬 Singapore

National University of Singapore

Yang Zhang

🇰🇷 South Korea

Seoul National University

Martin Steinegger
Minkyung Baek

KAIST

Ji-Joon Song
Byung-Ha Oh

POSTECH

Sangmin Lee

IBS

Ho Min Kim

🇭🇰 Hong Kong

Chinese University of Hong Kong

Yu Li

HKUST

Danqing Zhu

🇨🇳 China Mainland

Peking University 北京大学

Luhua Lai 来鲁华
Yi Qin Gao 高毅勤
Chu Wang 王初
Wentao Zhang 张文涛
  • Lab website: Link
  • Related Papers:
    • [ACL 2024] ProtLLM: ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training

Tsinghua University 清华大学

Haipeng Gong 龚海鹏
Chunfu Xu 徐纯福
Jianzhu Ma 马剑竹
Yang Liu 刘洋
Yanyan Lan 兰艳艳
Hao Zhou 周浩

CAS ICT 中国科学院计算技术研究所

Dongbo Bu 卜东波
Haicang Zhang 张海仓

CAS IBP 中国科学院生物物理研究所

Xianen Zhang 张先恩
Dianbing Wang 王殿冰

Renmin University of China 中国人民大学

Wenbing Huang 黄文炳

Shanghai Jiao Tong University 上海交通大学

Liang Hong 洪亮
Haifeng Cheng 陈海峰
Shuangjia Zheng 郑双佳
Yang Yang 杨旸
Hongbin Shen 沈红斌
Rui Qing 庆睿
Yuguang Wang 王宇光

Fudan University 复旦大学

Siqi Sun 孙思琦
Jianpeng Ma 马剑鹏

ShanghaiTech University 上海科技大学

Jiayi Dou 豆佳宜
Fang Bai 白芳

CAS SIMM 中国科学院上海药物研究所

Mingyue Zheng 郑明月

CAS CEMCS 中国科学院分子细胞科学卓越创新中心

Shaoqing Zhang 张少庆

Zhejiang University 浙江大学

Tingjun Hou 侯廷军

Westlake University 西湖大学

Fajie Yuan 原发杰
Longxin Cao 曹龙兴
Zibo Chen 陈子博
Peilong Lu 卢培龙
Jianyang Zeng 曾坚阳
Stan Z. Li 李子青

Zhejiang University of Technology 浙江工业大学

Guijun Zhang 张贵军

Sun Yat-sen University 中山大学

Yuedong Yang 杨跃东

CAS SIAT 深圳先进技术研究院

Xiaozhou Luo 罗小舟

Tsinghua SIGS 清华大学深圳国际研究生院

Feiran Li 李斐然

SUSTech 南方科技大学

Zhe Li 李喆

USTC 中国科学技术大学

Haiyan Liu 刘海燕
Qi Liu 刘淇

Xiamen University 厦门大学

Xiaoping Min 闵小平

Shandong University 山东大学

Jianyi Yang 杨建益

CAS TIB 中国科学院天津工业生物技术研究所

Huifeng Jiang 江会锋

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