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Change polyA-based and canonical splice site transcript filtration #134

Merged
merged 10 commits into from
Apr 9, 2024
Merged

Change polyA-based and canonical splice site transcript filtration #134

merged 10 commits into from
Apr 9, 2024

Commits on Apr 3, 2024

  1. move threshold

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  2. add condition for reporting novel monointronic transcripts

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  3. add polya strategy option

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  4. monoexonic polya strategy

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  5. fix help message

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  6. fix SS strand filtering

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  7. allow user to set splice site filtration strategy

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  8. introduce automatic filtering selection

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  9. set default strategy to only_canonical

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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  10. remove low_memory

    @andrewprzh
    andrewprzh committed Apr 3, 2024
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