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Profile speed up filter #159

Merged
merged 26 commits into from
Apr 11, 2024
Merged

Profile speed up filter #159

merged 26 commits into from
Apr 11, 2024

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andrewprzh
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  • Speed up profile construction
  • Speed up read assignment
  • Filter mono-exonic and mono-intronic isoforms before read assignment

@vpeddu
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vpeddu commented Mar 29, 2024

wanted to bump this for review if possible- i can confirm that running this patch led to a multiple day speed up in my workflow.

@andrewprzh
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@vpeddu

Thanks for the feedback! We are rather short on man-power at the moment, but I'll try to release this ASAP.

Best
Andrey

@andrewprzh andrewprzh force-pushed the profile_speed_up_filter branch 2 times, most recently from 2313de8 to aa76ae9 Compare April 10, 2024 17:36
@andrewprzh andrewprzh merged commit a0c16c8 into master Apr 11, 2024
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2 participants